Fixed ci.test argument with multiple NAs; closes #203 #31
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| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: CRAN check and test | |
| jobs: | |
| CRAN-check-and-test: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: add TeX deps | |
| run: | | |
| install.packages('tinytex') | |
| tinytex::tlmgr_install("ae") | |
| tinytex::tlmgr_install("thumbpdf") | |
| tinytex::tlmgr_install("paralist") | |
| tinytex::tlmgr_install("pgf") | |
| tinytex::tlmgr_install("grfext") | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - name: Query dependencies | |
| run: | | |
| install.packages(c("devtools", "covr")) | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_cran("rcmdcheck") | |
| devtools::install_deps(dependencies = TRUE) | |
| install.packages("TMB", type = "source") | |
| install.packages("glmmTMB", repos = "https://glmmTMB.github.io/glmmTMB/repos", type = "source") | |
| devtools::install_github("paul-buerkner/brms", build_vignettes = FALSE) | |
| devtools::install_github("lrberge/fixest") | |
| install.packages(c("AER", "alpaca", "Bergm", "bife", "biglm", "btergm", "dynlm", "eha", "ergm", "feisr", "forecast", "gamlss.inf", "lfe", "lme4", "maxLik", "metaSEM", "miceadds", "mlogit", "ordinal", "plm", "spatialreg", "speedglm", "truncreg")) | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes"), error_on = "error", check_dir = "check", build_args = c("--no-manual", "--no-build-vignettes")) | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Unit testing | |
| run: withr::with_envvar(c("NOT_CRAN" = "true"), devtools::test()) | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: withr::with_envvar(c("NOT_CRAN" = "true"), covr::codecov(quiet = FALSE)) | |
| shell: Rscript {0} |