Fix mm_mapopt_t in Mappy (#1177)

Add transition. Related to #1069
lh3 · Mar 14, 2024 · 9b0ff24 · 9b0ff24
1 parent b676250
commit 9b0ff24
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/python/cmappy.pxd b/python/cmappy.pxd
@@ -36,6 +36,7 @@ cdef extern from "minimap.h":
 		float alt_drop
 
 		int a, b, q, e, q2, e2
+		int transition
 		int sc_ambi
 		int noncan
 		int junc_bonus