R CMD check in rhub images #15
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| name: R CMD check in rhub images | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '0 2 * * SAT' | |
| env: | |
| PACKAGE_NAME: libkrigingtemplate | |
| jobs: | |
| rhub-local_check: | |
| name: Linux ${{ matrix.rhubos }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| #rhub::local_check_linux_images() | |
| rhubos: [ 'debian-clang-devel','debian-gcc-devel','debian-gcc-devel-nold','debian-gcc-patched','debian-gcc-release','fedora-clang-devel','fedora-gcc-devel','rocker-gcc-san','ubuntu-gcc-devel','ubuntu-gcc-release' ] | |
| # not suitable for compile: ,'ubuntu-rchk' ] | |
| runs-on: ubuntu-latest | |
| container: | |
| image: rhub/${{ matrix.rhubos }} | |
| options: --user root | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| - name: Add dependencies | |
| shell: bash | |
| run: | | |
| DIST_ID=$(cat /etc/*-release | grep ID | cut -d= -f2 | head -1 | tr -d '\t') | |
| if [ "${DIST_ID}" = "fedora" ]; then | |
| dnf install -y git cmake gfortran libcurl-devel libxml2-devel openssl-devel fontconfig-devel hdf5-devel; | |
| else | |
| apt-get update | |
| apt-get install -y git cmake gfortran libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libxml2-dev libssl-dev libfontconfig1-dev libhdf5-dev | |
| fi | |
| - name: Add workaround dependencies | |
| shell: bash | |
| run: | | |
| apt install -y libc++-dev libc++abi-dev | |
| if: matrix.rhubos == 'debian-clang-devel' | |
| - name: Remove tmp requirements | |
| shell: bash | |
| run: | | |
| DIST_ID=$(cat /etc/*-release | grep ID | cut -d= -f2 | head -1 | tr -d '\t') | |
| if [ "${DIST_ID}" = "fedora" ]; then | |
| dnf remove -y git; | |
| else | |
| apt-get remove -y git; | |
| fi | |
| - name: Install devtools | |
| shell: bash | |
| run: | | |
| # Add --insecure to workaround missing certificates on Windows | |
| # --header is not required by an useful example if the repo becomes private | |
| curl --insecure --header 'authorization: Bearer ${{ secrets.GITHUB_TOKEN }}' -LO https://raw.githubusercontent.com/libKriging/${{ env.PACKAGE_NAME }}/${{ env.BRANCH_NAME }}/tools/install_packages.R | |
| export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin | |
| Rscript --no-save ./install_packages.R devtools | |
| - name: devtools install_deps from ${{ env.BRANCH_NAME }} | |
| shell: bash | |
| run: | | |
| export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin | |
| Rscript -e "library(devtools); install_deps('.',dependencies = TRUE)" | |
| - name: setup for CRAN | |
| shell: bash | |
| run: | | |
| export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin | |
| Rscript --no-save ./install_packages.R roxygen2 | |
| Rscript -e "remove.packages('roxygen2')" | |
| - name: R CMD build | |
| shell: bash | |
| env: # this alias helps to reuse following line as script | |
| OS: ${{ matrix.rhubos }} | |
| run: | | |
| export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin | |
| R CMD build . | |
| mkdir CRAN-$OS | |
| mv ${{ env.PACKAGE_NAME }}_*.* CRAN-$OS/. | |
| - name: R CMD check | |
| shell: bash | |
| env: | |
| OS: ${{ matrix.rhubos }} | |
| run: | | |
| export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin | |
| R CMD check --as-cran --no-manual CRAN-$OS/${{ env.PACKAGE_NAME }}* || ( | |
| test -f ${{ env.PACKAGE_NAME }}.Rcheck/00install.out && cat ${{ env.PACKAGE_NAME }}.Rcheck/00install.out | sed -e 's/^/00install.out| /' && echo "[The error may be shown before 00install.out| listing"; | |
| exit 1 | |
| ) |