Build and Test #902
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| name: Build and Test | |
| on: | |
| schedule: | |
| - cron: 0 */24 * * * | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: [main] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| env: | |
| GEANT4_VERSION: 11.2.2 | |
| XERCES_VERSION: 3.2.5 | |
| CPP_STANDARD: 17 | |
| Geant4_DIR: ${{ github.workspace }}/geant4 | |
| jobs: | |
| install-with-geant4-from-conda: | |
| name: Install dependencies with conda | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 60 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] # Geant4 is not available on conda for windows TODO: update this when it is | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.12 | |
| - name: Install Geant4 and cmake using conda | |
| run: | | |
| conda install -c conda-forge cmake ninja geant4=${{ env.GEANT4_VERSION }} | |
| - name: Install additional dependencies (Ubuntu) | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| conda install -c conda-forge gxx_linux-64 | |
| - name: Install additional dependencies (MacOS) | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| conda install -c conda-forge clang_osx-64 | |
| - name: Print versions | |
| run: | | |
| conda --version | |
| cmake --version | |
| echo "Geant4: ${{ env.GEANT4_VERSION }}" | |
| geant4-config --version | |
| geant4-config --check-datasets | |
| - name: Install datasets if missing # Shouldn't they be available after the conda install? | |
| run: | | |
| geant4-config --install-datasets | |
| geant4-config --check-datasets | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: pip install the package from source | |
| run: | | |
| python -m pip install .[test] | |
| python -c "import geant4_python_application; print(geant4_python_application.version)" | |
| - name: Check datasets are accessible # Datasets should have been installed by the conda package, and should be accessible | |
| run: | | |
| python -c "import geant4_python_application as g4; g4.files.datasets.check_datasets(throw=True)" | |
| - name: Run tests | |
| run: | | |
| python -m pytest -vv --reruns 3 --reruns-delay 30 --only-rerun "(?i)http|timeout|connection|socket|resolve" | |
| build-geant4: | |
| name: Build Geant4 on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - name: Setup CMake | |
| uses: lukka/get-cmake@v3.30.3 | |
| - name: Cache Xerces-C Installation | |
| id: cache-xerces | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ github.workspace }}/xerces | |
| key: xerces-v${{ env.XERCES_VERSION }}-cpp${{ env.CPP_STANDARD }} | |
| - name: Build and Install Xerces-C | |
| if: steps.cache-xerces.outputs.cache-hit != 'true' | |
| run: | | |
| git clone https://github.com/apache/xerces-c.git xerces-source | |
| git -C xerces-source checkout tags/v${{ env.XERCES_VERSION }} | |
| cmake -B xerces-build -S xerces-source -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${{ github.workspace }}/xerces -DCMAKE_CXX_STANDARD=${{ env.CPP_STANDARD }} -DBUILD_SHARED_LIBS=OFF ${{ matrix.os == 'windows-latest' && '-DCMAKE_MSVC_RUNTIME_LIBRARY=MultiThreaded -DCMAKE_CXX_FLAGS_RELEASE="/MT"' || '-G Ninja -DCMAKE_CXX_FLAGS=-fPIC -DCMAKE_C_FLAGS=-fPIC -Dnetwork-accessor=socket -Dtranscoder=iconv' }} | |
| cmake --build xerces-build --parallel $(nproc) --config Release --target install | |
| - name: Cache Geant4 Installation | |
| id: cache-geant4 | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.Geant4_DIR }} | |
| key: geant4-v${{ env.GEANT4_VERSION }}-cpp${{ env.CPP_STANDARD }} | |
| - name: Build and Install Geant4 (without datasets) | |
| if: steps.cache-geant4.outputs.cache-hit != 'true' | |
| run: | | |
| git clone https://github.com/Geant4/geant4.git ${{ github.workspace }}/geant4-source --depth 1 --branch v${{ env.GEANT4_VERSION }} | |
| cmake -B geant4-build -S geant4-source -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${{ env.Geant4_DIR }} -DXERCESC_ROOT_DIR=${{ github.workspace }}/xerces -DCMAKE_CXX_STANDARD=${{ env.CPP_STANDARD }} -DGEANT4_USE_GDML=ON -DGEANT4_INSTALL_EXAMPLES=OFF -DGEANT4_INSTALL_DATA=OFF -DGEANT4_BUILD_TLS_MODEL=global-dynamic -DBUILD_STATIC_LIBS=ON -DBUILD_SHARED_LIBS=OFF ${{ matrix.os == 'windows-latest' && '-DCMAKE_MSVC_RUNTIME_LIBRARY=MultiThreaded -DCMAKE_CXX_FLAGS_RELEASE="/MT"' || '-G Ninja -DCMAKE_CXX_FLAGS=-fPIC -DCMAKE_C_FLAGS=-fPIC -DGEANT4_USE_SYSTEM_EXPAT=OFF' }} | |
| cmake --build geant4-build --parallel $(nproc) --config Release --target install | |
| install-geant4-datasets: | |
| name: Download Geant4 datasets for ${{ matrix.os }} | |
| needs: [build-geant4] | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 30 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - name: Cache Geant4 Installation | |
| id: cache-geant4 | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.Geant4_DIR }} | |
| key: geant4-v${{ env.GEANT4_VERSION }}-cpp${{ env.CPP_STANDARD }} | |
| fail-on-cache-miss: true | |
| - name: Cache Geant4 Datasets | |
| id: cache-geant4-data | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ github.workspace }}/geant4-data | |
| key: geant4-${{ env.GEANT4_VERSION }}-data | |
| enableCrossOsArchive: true | |
| lookup-only: true | |
| - name: Move Geant4 datasets (Ubuntu/MacOS) | |
| if: | |
| steps.cache-geant4-data.outputs.cache-hit != 'true' && matrix.os != | |
| 'windows-latest' | |
| shell: bash | |
| run: | | |
| bash ${{ env.Geant4_DIR }}/bin/geant4-config --install-datasets | |
| bash ${{ env.Geant4_DIR }}/bin/geant4-config --check-datasets | |
| mv ${{ env.Geant4_DIR }}/share/Geant4/data ${{ github.workspace }}/geant4-data | |
| - name: Move Geant4 datasets (Windows) | |
| if: | |
| steps.cache-geant4-data.outputs.cache-hit != 'true' && matrix.os == | |
| 'windows-latest' | |
| shell: powershell | |
| run: | | |
| Get-ChildItem -Path ${{ env.Geant4_DIR }}\bin | |
| cmd /c ${{ env.Geant4_DIR }}\bin\geant4-config.cmd --install-datasets | |
| cmd /c ${{ env.Geant4_DIR }}\bin\geant4-config.cmd --check-datasets | |
| Move-Item ${{ env.Geant4_DIR }}\share\Geant4\data ${{ github.workspace }}\geant4-data | |
| build-test: | |
| name: | |
| Build and Test for ${{ matrix.os }} (Python ${{ matrix.python-version }}) | |
| needs: [install-geant4-datasets] | |
| timeout-minutes: 30 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup CMake | |
| uses: lukka/get-cmake@v3.30.3 | |
| - name: Setup Windows environment variables | |
| if: matrix.os == 'windows-latest' | |
| shell: bash | |
| run: | | |
| echo "CMAKE_ARGS=-DCMAKE_MSVC_RUNTIME_LIBRARY=MultiThreaded" >> $GITHUB_ENV | |
| - name: Cache Xerces-C Installation | |
| id: cache-xerces | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ github.workspace }}/xerces | |
| key: xerces-v${{ env.XERCES_VERSION }}-cpp${{ env.CPP_STANDARD }} | |
| fail-on-cache-miss: true | |
| - name: Cache Geant4 Installation | |
| id: cache-geant4 | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.Geant4_DIR }} | |
| key: geant4-v${{ env.GEANT4_VERSION }}-cpp${{ env.CPP_STANDARD }} | |
| fail-on-cache-miss: true | |
| - name: pip install the package | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install .[test] | |
| git tag | |
| python -c "import geant4_python_application; print(geant4_python_application.version)" | |
| # test ability to download datasets in one job and use the cache in the others | |
| - name: Cache Geant4 Datasets | |
| if: matrix.python-version != '3.11' | |
| id: cache-geant4-data | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ github.workspace }}/geant4-data | |
| key: geant4-${{ env.GEANT4_VERSION }}-data | |
| fail-on-cache-miss: true | |
| enableCrossOsArchive: true | |
| - name: Move Geant4 datasets (Ubuntu/MacOS) | |
| if: matrix.python-version != '3.11' && matrix.os != 'windows-latest' | |
| run: | | |
| GEANT4_DATA_DIR=$(python -c "import geant4_python_application; print(geant4_python_application.data_directory())") | |
| mkdir -p ${{ github.workspace }}/geant4-data "$GEANT4_DATA_DIR" | |
| mv ${{ github.workspace }}/geant4-data/* "$GEANT4_DATA_DIR" | |
| # TODO: unify this with the above | |
| - name: Move Geant4 datasets (Windows) | |
| if: matrix.python-version != '3.11' && matrix.os == 'windows-latest' | |
| shell: powershell | |
| run: | | |
| $env:GEANT4_DATA_DIR = python -c "import geant4_python_application; print(geant4_python_application.data_directory())" | |
| New-Item -ItemType Directory -Path "${{ github.workspace }}\geant4-data" -Force | |
| New-Item -ItemType Directory -Path $env:GEANT4_DATA_DIR -Force | |
| Move-Item "${{ github.workspace }}\geant4-data\*" $env:GEANT4_DATA_DIR -Force | |
| - name: Install datasets | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 30 | |
| retry_wait_seconds: 60 | |
| max_attempts: 5 | |
| command: | | |
| python -c "import geant4_python_application as g4; g4.install_datasets()" | |
| # Check that the datasets are installed correctly | |
| python -c "import geant4_python_application as g4; g4.files.datasets.check_datasets(throw=True)" | |
| - name: Run tests | |
| run: | | |
| python -m pytest -vv --reruns 3 --reruns-delay 30 --only-rerun "(?i)http|timeout|connection|socket|resolve" | |
| - name: Run example notebooks | |
| if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest' | |
| run: | | |
| python -m pip install jupyter nbconvert matplotlib | |
| for notebook in $(find examples -name '*.ipynb'); do | |
| jupyter nbconvert --to notebook --execute --inplace $notebook | |
| done |