1.2.5

Bug Fix

1. fix a minor problem when occasionally the common part of ref and alt allele contains concordant repeats which is not the repeat variants unit.
2. fix a bug for using csto as the cds length error in stoploss snv mutation annotation, which leads the error extent length.
3. For multi-aa synonymous variants, the anchor position is wrong, this might influence those rare mutations, update is recommended for all users.

Feature Added to meet the HGVS current naming rule.

1. Change getUnifiedVar to give absolutely left or right aligned result without consider the repeat elements when "norep" is set to 1.
2. add standard_cHGVS key for delXXXinsXXX format cHGVS annotation.
3. add standard_cHGVS for gene flanking region cHGVS annotation.