feat: Observation, Diagnostic Report (earthians#302)

* feat: Observation Template

* fix: Observation Template - reference field changes

* feat: FHIR Value Set

* fix: Medical Department in Observation Template and Sample Type in Lab Test sample

* feat: Observation

* fix: Observation - widget

* feat: color coding for lab test sample
option to set color in Lab Test Sample
option to override color in Observation Template

* fix: Observation Reference - field changes

* fix: observation Reference - make each row for a type

* fix: Observation Template - billable item

* fix: Observation Template - table multiselect to table

* fix: fhir value set - quick entry

* fix: Sample Collection - on invoicing and from encounter

* fix: Observation - set result select options

* fix: Sample Collection - create specimen on collection

* fix: Diagnostic Report - widget

* fix: Diagnostic Report - widget change

* fix: Observation Creation from sales invoice minor fix

* fix: fix: Diagnostic Report - add remarks in widget

* fix: Diagnostic Report widget - select input field, input text field

* fix: Insert Diagnostic Report on Sample Collection after insert
Diagnostic Report widget - remarks addition issue

* fix: Sample Collection - change status Completed to Collected

* fix: Observation Template - sample collection required check

* fix: Diagnostic Report widget - order_by creation

* fix: Sample Collection - order components by idx

* fix: Observation Template - Sample Collection required check change

* fix: Sample Colleciton , Observation Component - field changes

* fix: Diagnostic Report - widget remark div adaptive color

* fix: age range fields not showing in ref ranges table
defaul All to applies to field

* fix: validate if all samples are marked as collected

* fix: confirm before Mark as Collected
add referring practitioner field
show sampel details only if ob samples are not present

* fix: sample collect listview fields

* fix: add patient age to diagnostic report

* fix: Observation Template
- options for boolean result, validate number of options
Observation
- set options for boolean result
- reorder fields, fix display depends on
- add medical department, company
- set observation category, description from observation template, set status, time of result
- rename field remarks to note
- linter issues

* refactor: rename field sample_id to specimen

* fix: remove height for observation note

* fix: Create Sample Collection/Observation on Invoice Submit

* fix: Diagnostic Report widget background-color for has_component

* fix: set invoice status in Diagnostic Report and Observation

* fix: Diagnostic Report - change age field from data to int

* fix: Observation - add method field and fetch from Template

* fix: Observation - add relevant reference from observation template

* fix: Diagnostic Report Widget - add observation_idx field to have order same as in grouped template

* fix: wrong parameter, specimen status and time fetch to observation

* fix: Observation Widget - select result input icon

* fix: Observation Widget - input text field size to normal

* fix: Observation Widget - zero coming in result as previous fields were float

* fix: Observation Widget - validate non numeric input

* fix: add Service Unit, Practitioner and Department custom field in Sales Invoice Item

* fix: Observation Widget - validate non numeric input - issue fix

* fix: Diagnostic Report - set practitioner from Sales Invoice

* fix: Diagnostic Report widget - set specimen link, change layout, set time references

* fix: Speciment - naming with yymmdd#####

* fix: Diagnostic Report Widget - background color and field visibility issue

* fix: Observation - validate numerical value except <>

* fix: Diagnostic Report - widget change - note button to above and text field 100%

* fix: Diagnostic Report - add print data to jenv

* fix: Diagnostic Report - add company field

* fix: Diagnostic Report - Print format design change

* fix: Diagnostic Report - widget reference range change

* fix: Diagnostic Report - non numeric validation include decimal

* fix: set list view fieds, filters
set title for Diagnostic Report

* feat: add abbr to observation template
validate abbr
abbr applicable only if not has_component and category is Laboratory

* fix: interpretation template for imaging observation templates

* fix: patient link, sample type in specimen

* fix: calculate age method in patient - set in Diagnostic Report and Observation

* fix: Sample Type in Specimen

* fix: ignore permission for Diagnostic Report creation

* fix: age issue in observation reference

* fix: Diagnostic Report - user can create

* fix: Diagnostic Report widget - field missing issue

* fix: remove unused patches

* fix: Diagnostic Report Widget - Change in reference fetching
change in saving result
Imaging included in Observation Template

* fix: Imaging in Diagnostic Report Widget

* fix: Observation Template - create item and rate on checking is_billable

* fix: Observation Template - make permitted_data_type not reqd if has_component is checked

* fix: Patient Age - dob missing issue

* fix: track changes in doctypes

* fix: Diagnostic Report - move widget loading to refresh

* fix: make observation submittable, allow import
remove unsued variable, imports

* fix: fetch observationr reference if conditions not set

* fix: reference range text bug, string concat twice

* fix: Observation - add fields from Observation Template to Observation

* fix: Sample Collection - freeze message on marking collected

* fix: Observation Template - show unit for result type Text

* fix: Specimen - generate barcode

* fix: Sample Collection - specimen creation duplicate issue

* fix: Observation Template - diagnosis conditions

* fix: Inpatient Record - remove encounter with appointment reference from pending services on dicharge

* fix: Diagnostic Report Widget - result text parapgraph rendering issue

* fix: Observation - setting result time issue from widget

* fix: Diagnostic Report widget - make input field readonly if submitted or cancelled

* fix: Diagnostic Report Widget - change WIP

* fix: Get Observation query - include approved status for Diagnostic Print format

* fix: Diagnostic Report - submit observations on approving

* fix: Diagnostic Report - include imaging in widget
result missing issue

* fix: Diagnostic Report Widget - make text non mandatory in dialog

* fix: Diagnostic Report - grouped action issue

* fix: pass Referring Practitioner from invoice to Observation and Sample Collection

* fix: Widget - add static to dialog to restrict hiding on touch

* fix: Issue - diagnostic report gets created for normal Sales Invoices

* fix: Issue - link sample collection in Diagnostic Report

* fix: Observation - posting date and status readonly depends

* fix: Sample Collection - status color in list view

* fix: Sample Collection - set child table status Collected - Partly Collected

* fix: Diagnostic Report  - set status approved from observation

* fix: Diagnostic Report Widget approve btn label change

* fix: Service Request - sample collection creation - observation template issue

* fix: Service Request - create observation and sample collection from service request

* fix: Observation, Sample Collection for patient in Sales Invoice child table

* fix: Diagnostic Report creation issue on Sales Invoice Submit

* fix: Observation - ignore_permission on creation

* fix: Diagnostic Report - up, down, enter key input field navigation

* fix: Create Observation and Sample Collection - from Sales Invoice for Service Request

* fix: Create Observation and Sample Collection - from Service Reqeust

* fix: Diagnostic Report - fetch with Encounter reference

* fix: Diagnostic Report Default Print Format
Specimen barcode print format
Observation minor fix

* fix: Observation Template - remove Item Group mandatory

* fix: Observation Prescription table in Patient Encounter
Direct Invoicing of Observation

* fix: create_observation_on_si_submit check in Healthcare Settings

* test: Observation, Observation Template

* fix: Treatment Plan Template - include Observation

* fix: ci and linter errors

* refactor: code cleanup, optimisation

---------

Co-authored-by: Anoop Kurungadam <anoop@earthianslive.com>
Co-authored-by: Sajin SR <sajin@earthianslive.com>

healthcare/healthcare/doctype/diagnostic_report/diagnostic_report.js

@@ -0,0 +1,135 @@
+// Copyright (c) 2023, healthcare and contributors
+// For license information, please see license.txt
+
+frappe.ui.form.on("Diagnostic Report", {
+	refresh: function(frm) {
+		show_diagnostic_report(frm);
+		if (!frm.is_new()) {
+			frm.add_custom_button(__(`Get PDF`), function () {
+				generate_pdf_with_print_format(frm)
+			})
+		}
+	},
+	before_save: function(frm) {
+		if (!frm.doc.is_new() && frm.is_dirty()) {
+			this.diagnostic_report.save_action("save")
+		}
+	},
+	after_workflow_action: function(frm) {
+		frappe.call({
+			"method": "healthcare.healthcare.doctype.diagnostic_report.diagnostic_report.set_observation_status",
+			args: {
+				docname: frm.doc.name
+			},
+		})
+	}
+});
+
+var show_diagnostic_report = function(frm) {
+	frm.fields_dict.observation.html("");
+	if (frm.doc.patient) {
+		this.diagnostic_report = new healthcare.Diagnostic.DiagnosticReport({
+			frm: frm,
+			observation_wrapper: $(frm.fields_dict.observation.wrapper),
+			create_observation: false,
+		});
+		this.diagnostic_report.refresh();
+	}
+}
+
+var generate_pdf_with_print_format = function(frm) {
+	const letterheads = get_letterhead_options();
+	const dialog = new frappe.ui.Dialog({
+		title: __('Print {0}', [frm.doc.name]),
+		fields: [
+			{
+				fieldtype: "Select",
+				label: __("Letter Head"),
+				fieldname: "letter_sel",
+				options: letterheads,
+				default: letterheads[0],
+			},
+			{
+				fieldtype: "Select",
+				label: __("Print Format"),
+				fieldname: "print_sel",
+				options: frappe.meta.get_print_formats(frm.doc.doctype),
+				default: frappe.get_meta(frm.doc.doctype).default_print_format,
+			}
+		],
+	});
+
+	dialog.set_primary_action(__("Print"), (args) => {
+		if (!args) return;
+		const default_print_format = frappe.get_meta(frm.doc.doctype).default_print_format;
+		const with_letterhead = args.letter_sel == __("No Letterhead") ? 0 : 1;
+		const print_format = args.print_sel ? args.print_sel : default_print_format;
+		const doc_names = JSON.stringify([
+			frm.doc.name,
+			]);
+		const letterhead = args.letter_sel;
+
+		let pdf_options = JSON.stringify({
+			"page-size": "A4",
+			"margin-top": "60mm",
+			"margin-bottom": "60mm",
+			"margin-left": "0mm",
+			"margin-right": "0mm",
+		});
+
+		if (letterhead == __("No Letterhead")) {
+			pdf_options = JSON.stringify({
+				"page-size": "A4",
+				"margin-top": "5mm",
+				"margin-bottom": "5mm",
+				"margin-left": "0mm",
+				"margin-right": "0mm",
+			});
+		}
+
+		const w = window.open(
+			"/api/method/frappe.utils.print_format.download_multi_pdf?" +
+				"doctype=" +
+				encodeURIComponent(frm.doc.doctype) +
+				"&name=" +
+				encodeURIComponent(doc_names) +
+				"&format=" +
+				encodeURIComponent(print_format) +
+				"&no_letterhead=" +
+				(with_letterhead ? "0" : "1") +
+				"&letterhead=" +
+				encodeURIComponent(letterhead) +
+				"&options=" +
+				encodeURIComponent(pdf_options)
+		);
+
+		if (!w) {
+			frappe.msgprint(__("Please enable pop-ups"));
+			return;
+		}
+	});
+
+	dialog.show();
+}
+
+var get_letterhead_options = () => {
+	const letterhead_options = [__("No Letterhead")];
+	frappe.call({
+		method: "frappe.client.get_list",
+		args: {
+			doctype: "Letter Head",
+			fields: ["name", "is_default"],
+			filters: { disabled: 0 },
+			limit_page_length: 0,
+		},
+		async: false,
+		callback(r) {
+			if (r.message) {
+				r.message.forEach((letterhead) => {
+					letterhead_options.push(letterhead.name);
+				});
+			}
+		},
+	});
+	return letterhead_options;
+};

healthcare/healthcare/doctype/diagnostic_report/diagnostic_report.json

@@ -0,0 +1,202 @@
+{
+ "actions": [],
+ "allow_rename": 1,
+ "autoname": "naming_series:",
+ "creation": "2023-06-24 10:55:17.218952",
+ "default_view": "List",
+ "doctype": "DocType",
+ "editable_grid": 1,
+ "engine": "InnoDB",
+ "field_order": [
+  "patient",
+  "patient_name",
+  "gender",
+  "age",
+  "practitioner",
+  "practitioner_name",
+  "column_break_v6l1",
+  "company",
+  "status",
+  "naming_series",
+  "ref_doctype",
+  "docname",
+  "sales_invoice_status",
+  "reference_posting_date",
+  "sample_collection",
+  "section_break_wtn1",
+  "observation",
+  "amended_from",
+  "title"
+ ],
+ "fields": [
+  {
+   "fieldname": "patient",
+   "fieldtype": "Link",
+   "in_list_view": 1,
+   "in_standard_filter": 1,
+   "label": "Patient",
+   "options": "Patient",
+   "read_only": 1
+  },
+  {
+   "fetch_from": "patient.patient_name",
+   "fieldname": "patient_name",
+   "fieldtype": "Data",
+   "in_list_view": 1,
+   "label": "Patient Name",
+   "read_only": 1
+  },
+  {
+   "fieldname": "column_break_v6l1",
+   "fieldtype": "Column Break"
+  },
+  {
+   "fieldname": "ref_doctype",
+   "fieldtype": "Link",
+   "hidden": 1,
+   "in_standard_filter": 1,
+   "label": "Ref DocType",
+   "options": "DocType",
+   "read_only": 1
+  },
+  {
+   "fieldname": "docname",
+   "fieldtype": "Dynamic Link",
+   "in_list_view": 1,
+   "in_standard_filter": 1,
+   "label": "Ref DocName",
+   "options": "ref_doctype",
+   "read_only": 1
+  },
+  {
+   "fieldname": "section_break_wtn1",
+   "fieldtype": "Section Break"
+  },
+  {
+   "fieldname": "observation",
+   "fieldtype": "HTML",
+   "label": "Observation"
+  },
+  {
+   "fetch_from": "patient.sex",
+   "fieldname": "gender",
+   "fieldtype": "Link",
+   "in_list_view": 1,
+   "label": "Gender",
+   "options": "Gender",
+   "read_only": 1
+  },
+  {
+   "fieldname": "naming_series",
+   "fieldtype": "Select",
+   "label": "Series",
+   "options": "DIA-RPT-.YYYY.-"
+  },
+  {
+   "fieldname": "sample_collection",
+   "fieldtype": "Link",
+   "hidden": 1,
+   "label": "Sample Collection",
+   "options": "Sample Collection"
+  },
+  {
+   "fieldname": "amended_from",
+   "fieldtype": "Link",
+   "label": "Amended From",
+   "no_copy": 1,
+   "options": "Diagnostic Report",
+   "print_hide": 1,
+   "read_only": 1
+  },
+  {
+   "fieldname": "age",
+   "fieldtype": "Data",
+   "in_list_view": 1,
+   "label": "Age",
+   "read_only": 1
+  },
+  {
+   "fieldname": "sales_invoice_status",
+   "fieldtype": "Data",
+   "label": "Sales Invoice Status",
+   "read_only": 1
+  },
+  {
+   "fieldname": "practitioner",
+   "fieldtype": "Link",
+   "in_list_view": 1,
+   "in_standard_filter": 1,
+   "label": "Practitioner",
+   "options": "Healthcare Practitioner",
+   "read_only": 1
+  },
+  {
+   "fetch_from": "practitioner.practitioner_name",
+   "fieldname": "practitioner_name",
+   "fieldtype": "Data",
+   "label": "Practitioner Name",
+   "read_only": 1
+  },
+  {
+   "fieldname": "company",
+   "fieldtype": "Link",
+   "in_standard_filter": 1,
+   "label": "Company",
+   "options": "Company",
+   "read_only": 1
+  },
+  {
+   "fieldname": "title",
+   "fieldtype": "Data",
+   "hidden": 1,
+   "label": "Title",
+   "read_only": 1
+  },
+  {
+   "fieldname": "reference_posting_date",
+   "fieldtype": "Date",
+   "label": "Reference Posting Date",
+   "read_only": 1
+  },
+  {
+   "allow_on_submit": 1,
+   "fieldname": "status",
+   "fieldtype": "Select",
+   "label": "Status",
+   "options": "Open\nPending Review\nPartially Approved\nApproved\nDisapproved",
+   "read_only": 1
+  }
+ ],
+ "index_web_pages_for_search": 1,
+ "links": [],
+ "modified": "2023-10-16 17:53:14.702170",
+ "modified_by": "Administrator",
+ "module": "Healthcare",
+ "name": "Diagnostic Report",
+ "naming_rule": "By \"Naming Series\" field",
+ "owner": "Administrator",
+ "permissions": [
+  {
+   "create": 1,
+   "delete": 1,
+   "email": 1,
+   "export": 1,
+   "print": 1,
+   "read": 1,
+   "report": 1,
+   "role": "System Manager",
+   "share": 1,
+   "write": 1
+  }
+ ],
+ "sort_field": "modified",
+ "sort_order": "DESC",
+ "states": [
+  {
+   "color": "Orange",
+   "title": "Open"
+  }
+ ],
+ "title_field": "title",
+ "track_changes": 1
+}