complement_seq

Biopiece: complement_seq

Description

complement_seq results in reverse/complemented sequence.

Usage

... | complement_seq [options]

Options

[-?         | --help]               #  Print full usage description.
[-I <file!> | --stream_in=<file!>]  #  Read input from stream file   -  Default=STDIN
[-O <file>  | --stream_out=<file>]  #  Write output to stream file   -  Default=STDOUT
[-v         | --verbose]            #  Verbose output.

Examples

To reverse complement sequence first reverse the sequence with reverse_seq and then complement it using complement_seq (or visa versa):

... | complement_seq | reverse_seq

See also

reverse_seq

Author

Martin Asser Hansen - Copyright (C) - All rights reserved.

mail@maasha.dk

August 2007

License

GNU General Public License version 2

http://www.gnu.org/copyleft/gpl.html

Help

complement_seq is part of the Biopieces framework.

http://www.biopieces.org