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now that perl will be installed it should work
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,165 +1,162 @@ | ||
| @article{gelman1996posterior, | ||
| title = {Posterior predictive assessment of model fitness via realized discrepancies}, | ||
| author = {Gelman, A. and Meng, X. L. and Stern, H.}, | ||
| journal = {Statistica Sinica}, | ||
| pages = {733--760}, | ||
| year = {1996}, | ||
| publisher = {JSTOR}, | ||
| url = {http://www.stat.columbia.edu/~gelman/research/published/A6n41.pdf} | ||
| author = "Gelman, A. and Meng, X. L. and Stern, H.", | ||
| title = "{Posterior predictive assessment of model fitness via realized discrepancies}", | ||
| journal = "Statistica Sinica", | ||
| pages = "733--760", | ||
| year = "1996", | ||
| publisher = "JSTOR", | ||
| url = "http://www.stat.columbia.edu/~gelman/research/published/A6n41.pdf" | ||
| } | ||
|
|
||
| @inproceedings{Conway:2011in, | ||
| author = {Conway, J. S.}, | ||
| title = {Incorporating Nuisance Parameters in Likelihoods for Multisource Spectra}, | ||
| booktitle = {PHYSTAT 2011}, | ||
| eprint = {1103.0354}, | ||
| archivePrefix= {arXiv}, | ||
| primaryClass = {physics.data-an}, | ||
| doi = {10.5170/CERN-2011-006.115}, | ||
| pages = {115--120}, | ||
| year = {2011} | ||
| author = "Conway, J. S.", | ||
| title = "{Incorporating Nuisance Parameters in Likelihoods for Multisource Spectra}", | ||
| booktitle = "PHYSTAT 2011", | ||
| eprint = "1103.0354", | ||
| archivePrefix = "arXiv", | ||
| primaryClass = "physics.data-an", | ||
| doi = "10.5170/CERN-2011-006.115", | ||
| pages = "115--120", | ||
| year = "2011" | ||
| } | ||
|
|
||
| @article{Arguelles:2019izp, | ||
| author = {Argüelles, Carlos A. and Schneider, Austin and Yuan, Tianlu}, | ||
| title = {A binned likelihood for stochastic models}, | ||
| eprint = {1901.04645}, | ||
| archivePrefix= {arXiv}, | ||
| primaryClass = {physics.data-an}, | ||
| doi = {10.1007/JHEP06(2019)030}, | ||
| journal = {JHEP}, | ||
| volume = {06}, | ||
| pages = {030}, | ||
| year = {2019} | ||
| author = "Argüelles, Carlos A. and Schneider, Austin and Yuan, Tianlu", | ||
| title = "{A binned likelihood for stochastic models}", | ||
| eprint = "1901.04645", | ||
| archivePrefix = "arXiv", | ||
| primaryClass = "physics.data-an", | ||
| doi = "10.1007/JHEP06(2019)030", | ||
| journal = "JHEP", | ||
| volume = "06", | ||
| pages = "030", | ||
| year = "2019" | ||
| } | ||
|
|
||
| @article{Dembinski:2022ios, | ||
| author = {Dembinski, Hans Peter and Abdelmotteleb, Ahmed}, | ||
| title = {A new maximum-likelihood method for template fits}, | ||
| eprint = {2206.12346}, | ||
| archivePrefix= {arXiv}, | ||
| primaryClass = {stat.ME}, | ||
| doi = {10.1140/epjc/s10052-022-11019-z}, | ||
| journal = {Eur. Phys. J. C}, | ||
| volume = {82}, | ||
| number = {11}, | ||
| pages = {1043}, | ||
| year = {2022} | ||
| author = "Dembinski, Hans Peter and Abdelmotteleb, Ahmed", | ||
| title = "{A new maximum-likelihood method for template fits}", | ||
| eprint = "2206.12346", | ||
| archivePrefix = "arXiv", | ||
| primaryClass = "stat.ME", | ||
| doi = "10.1140/epjc/s10052-022-11019-z", | ||
| journal = "Eur. Phys. J. C", | ||
| volume = "82", | ||
| number = "11", | ||
| pages = "1043", | ||
| year = "2022" | ||
| } | ||
|
|
||
| @misc{Fang2014GewekeDiagnostics, | ||
| author = {Qijun Fang}, | ||
| title = {A Brief Introduction to Geweke’s Diagnostics}, | ||
| howpublished = {\url{https://math.arizona.edu/~piegorsch/675/GewekeDiagnostics.pdf}}, | ||
| note = {STAT 675, University of Arizona}, | ||
| year = {2014}, | ||
| month = {May}, | ||
| day = {7} | ||
| author = "Qijun Fang", | ||
| title = "{A Brief Introduction to Geweke’s Diagnostics}", | ||
| howpublished = "\url{https://math.arizona.edu/~piegorsch/675/GewekeDiagnostics.pdf}", | ||
| note = "STAT 675, University of Arizona", | ||
| year = "2014", | ||
| month = "May", | ||
| day = "7" | ||
| } | ||
|
|
||
| @mastersthesis{karlsbakk2011, | ||
| author = {Jarle Karlsbakk}, | ||
| title = {Likelihood Inference and Comparison of Time-Inhomogeneous Markov Processes}, | ||
| school = {Stockholm University, Department of Mathematics}, | ||
| year = {2011}, | ||
| type = {Master's Thesis}, | ||
| note = {Accessed: 2024-09-08}, | ||
| url = {https://www2.math.su.se/matstat/reports/master/2011/rep2/report.pdf}, | ||
| chapter = {3.1} | ||
| author = "Jarle Karlsbakk", | ||
| title = "{Likelihood Inference and Comparison of Time-Inhomogeneous Markov Processes}", | ||
| school = "Stockholm University, Department of Mathematics", | ||
| year = "2011", | ||
| type = "Master's Thesis", | ||
| url = "https://www2.math.su.se/matstat/reports/master/2011/rep2/report.pdf", | ||
| chapter = "3.1" | ||
| } | ||
|
|
||
| @article{Dunkley:2004sv, | ||
| author = {Dunkley, Joanna and Bucher, Martin and Ferreira, Pedro G. and Moodley, Kavilan and Skordis, Constantinos}, | ||
| title = {Fast and reliable MCMC for cosmological parameter estimation}, | ||
| eprint = {astro-ph/0405462}, | ||
| archivePrefix= {arXiv}, | ||
| doi = {10.1111/j.1365-2966.2004.08464.x}, | ||
| journal = {Mon. Not. Roy. Astron. Soc.}, | ||
| volume = {356}, | ||
| pages = {925--936}, | ||
| year = {2005} | ||
| author = "Dunkley, Joanna and Bucher, Martin and Ferreira, Pedro G. and Moodley, Kavilan and Skordis, Constantinos", | ||
| title = "{Fast and reliable MCMC for cosmological parameter estimation}", | ||
| eprint = "astro-ph/0405462", | ||
| archivePrefix = "arXiv", | ||
| doi = "10.1111/j.1365-2966.2004.08464.x", | ||
| journal = "Mon. Not. Roy. Astron. Soc.", | ||
| volume = "356", | ||
| pages = "925--936", | ||
| year = "2005" | ||
| } | ||
|
|
||
| @manual{StanManual, | ||
| title = {Stan Reference Manual: Effective Sample Size}, | ||
| author = {{Stan Development Team}}, | ||
| year = {2018}, | ||
| note = {Version 2.18}, | ||
| url = {https://mc-stan.org/docs/2_18/reference-manual/effective-sample-size-section.html} | ||
| title = "{Stan Reference Manual: Effective Sample Size}", | ||
| author = "{Stan Development Team}", | ||
| year = "2018", | ||
| note = "Version 2.18", | ||
| url = "https://mc-stan.org/docs/2_18/reference-manual/effective-sample-size-section.html" | ||
| } | ||
|
|
||
| @misc{hanson2008mcmc, | ||
| author = {Kenneth M. Hanson}, | ||
| title = {Tutorial on Markov Chain Monte Carlo}, | ||
| year = {2008}, | ||
| note = {Revised 14/05/08, LA-UR-05-5680}, | ||
| howpublished = {Presented at the 29th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Technology, Gif-sur-Yvette, France, July 8–13, 2009}, | ||
| url = {https://kmh-lanl.hansonhub.com/talks/maxent00b.pdf}, | ||
| institution = {Los Alamos National Laboratory} | ||
| author = "Kenneth M. Hanson", | ||
| title = "{Tutorial on Markov Chain Monte Carlo}", | ||
| year = "2008", | ||
| note = "Revised 14/05/08, LA-UR-05-5680", | ||
| howpublished = "Presented at the 29th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Technology, Gif-sur-Yvette, France, July 8–13, 2009", | ||
| url = "https://kmh-lanl.hansonhub.com/talks/maxent00b.pdf", | ||
| institution = "Los Alamos National Laboratory" | ||
| } | ||
|
|
||
| @article{roberts2009adaptive, | ||
| author = {Gareth O. Roberts and Jeffrey S. Rosenthal}, | ||
| title = {Examples of Adaptive MCMC}, | ||
| journal = {Journal of Computational and Graphical Statistics}, | ||
| volume = {18}, | ||
| number = {2}, | ||
| year = {2009}, | ||
| pages = {349--367}, | ||
| url = {http://www.jstor.org/stable/25651249}, | ||
| note = {Accessed: 2024-09-08} | ||
| author = "Gareth O. Roberts and Jeffrey S. Rosenthal", | ||
| title = "{Examples of Adaptive MCMC}", | ||
| journal = "Journal of Computational and Graphical Statistics", | ||
| volume = "18", | ||
| number = "2", | ||
| year = "2009", | ||
| pages = "349--367", | ||
| url = "http://www.jstor.org/stable/25651249", | ||
| } | ||
|
|
||
| @article{James:2004xla, | ||
| author = {James, Fred and Winkler, Matthias}, | ||
| title = {MINUIT User's Guide}, | ||
| month = {June}, | ||
| year = {2004} | ||
| author = "James, Fred and Winkler, Matthias", | ||
| title = "{MINUIT User's Guide}", | ||
| month = "June", | ||
| year = "2004" | ||
| } | ||
|
|
||
| @book{jeffreys1998theory, | ||
| author = {H. Jeffreys}, | ||
| title = {The Theory of Probability}, | ||
| publisher = {UOP Oxford}, | ||
| year = {1998}, | ||
| doi = {10.2307/3619118} | ||
| author = "H. Jeffreys", | ||
| title = "{The Theory of Probability}", | ||
| publisher = "UOP Oxford", | ||
| year = "1998", | ||
| doi = "10.2307/3619118" | ||
| } | ||
|
|
||
| @book{press1992numerical, | ||
| author = {William H. Press and Saul A. Teukolsky and William T. Vetterling and Brian P. Flannery}, | ||
| title = {Numerical Recipes in C: The Art of Scientific Computing}, | ||
| edition = {Second Edition}, | ||
| publisher = {Cambridge University Press}, | ||
| year = {1992}, | ||
| note = {William H. Press: Harvard-Smithsonian Center for Astrophysics, Saul A. Teukolsky: Department of Physics, Cornell University, William T. Vetterling: Polaroid Corporation, Brian P. Flannery: EXXON Research and Engineering Company} | ||
| author = "William H. Press and Saul A. Teukolsky and William T. Vetterling and Brian P. Flannery", | ||
| title = "{Numerical Recipes in C: The Art of Scientific Computing}", | ||
| edition = "Second Edition", | ||
| publisher = "Cambridge University Press", | ||
| year = "1992", | ||
| note = "William H. Press: Harvard-Smithsonian Center for Astrophysics, Saul A. Teukolsky: Department of Physics, Cornell University, William T. Vetterling: Polaroid Corporation, Brian P. Flannery: EXXON Research and Engineering Company" | ||
| } | ||
|
|
||
| @misc{gabry2024visual, | ||
| author = {Jonah Gabry and Martin Modr{\'a}k}, | ||
| title = {Visual MCMC diagnostics using the bayesplot package}, | ||
| year = {2024}, | ||
| month = {January}, | ||
| day = {30}, | ||
| howpublished = {\url{https://mc-stan.org/bayesplot/articles/visual-mcmc-diagnostics.html}}, | ||
| note = {Source: vignettes/visual-mcmc-diagnostics.Rmd} | ||
| author = "Jonah Gabry and Martin Modr{\'a}k", | ||
| title = "{Visual MCMC diagnostics using the bayesplot package}", | ||
| year = "2024", | ||
| month = "January", | ||
| day = "30", | ||
| howpublished = "\url{https://mc-stan.org/bayesplot/articles/visual-mcmc-diagnostics.html}", | ||
| note = "Source: vignettes/visual-mcmc-diagnostics.Rmd" | ||
| } | ||
|
|
||
| @misc{chakraborty2019estimating, | ||
| author = {Saptarshi Chakraborty and Suman K. Bhattacharya and Kshitij Khare}, | ||
| title = {Estimating accuracy of the MCMC variance estimator: a central limit theorem for batch means estimators}, | ||
| year = {2019}, | ||
| eprint = {1911.00915}, | ||
| archivePrefix= {arXiv}, | ||
| primaryClass = {stat.CO}, | ||
| url = {https://doi.org/10.48550/arXiv.1911.00915} | ||
| author = "Saptarshi Chakraborty and Suman K. Bhattacharya and Kshitij Khare", | ||
| title = "{Estimating accuracy of the MCMC variance estimator: a central limit theorem for batch means estimators}", | ||
| year = "2019", | ||
| eprint = "1911.00915", | ||
| archivePrefix = "arXiv", | ||
| primaryClass = "stat.CO", | ||
| url = "https://doi.org/10.48550/arXiv.1911.00915" | ||
| } | ||
|
|
||
| @misc{rossetti2024batch, | ||
| author = {Manuel D. Rossetti}, | ||
| title = {The Batch Means Method}, | ||
| booktitle = {Simulation Modeling and Arena, 2nd Edition}, | ||
| year = {2024}, | ||
| chapter = {5.4}, | ||
| url = {https://rossetti.github.io/RossettiArenaBook/ch5-BatchMeansMethod.html}, | ||
| note = {Accessed: 2024-09-08} | ||
| author = "Manuel D. Rossetti", | ||
| title = "{The Batch Means Method}", | ||
| booktitle = "Simulation Modeling and Arena, 2nd Edition", | ||
| year = "2024", | ||
| chapter = "5.4", | ||
| url = "https://rossetti.github.io/RossettiArenaBook/ch5-BatchMeansMethod.html", | ||
| } |
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