Version 1.0.16

• Bugfixes
• Small optimizations

MBG.tar.gz

Version 1.0.15

• Bugfixes
• Small optimizations

MBG.tar.gz

Version 1.0.14

-Bugfixes
-New options "--no-multiplex-cleaning", "--no-kmer-filter-inside-unitig", "--output-homology-map"

MBG.tar.gz

Version 1.0.13

-Bugfixes
-Refactors for lower memory and faster runtime
-New parameters "--copycount-filter-heuristic" "--only-local-resolve"

MBG.tar.gz

v1.0.12

• Bugfixes

MBG.tar.gz

Version 1.0.11

• New parameter --hpc-variant-onecopy-coverage to split repeats which only differ by homopolymers (if using --error-masking=hpc or msat) or microsatellites (if using collapse-msat or msat)
• New parameter --do-unsafe-guesswork-resolutions to use heuristics based on coverage and topology for resolution

MBG.tar.gz

v1.0.10

• Optimizations to reduce memory use
• New parameter --sequence-cache-file to reduce runtime by using a temporary file. Does not affect memory use. Uses approximately twice the input size for the temporary file
• New parameter --keep-gaps keeps low coverage unitigs if removing them would leave a gap
• Compilation on osx is now supported
  MBG.tar.gz

Version 1.0.9

• New parameter -R resolves small nodes even if some of the edges are not covered
• Output paths file is now always the same for the same input & parameters
• Bugfixes for crashes

MBG.tar.gz

Version 1.0.8

-Fix crash when using multiplex algorithm on exact palindrome nodes
-Fix small offset error in --output-sequence-paths read positions
-Output graphs should now be byte-by-byte identical between runs when using multiple threads
-Output graphs have a new tag "kl:f:" per node for estimated k-mer coverage before multiplex resolution
-Multiplex resolution is faster

MBG.tar.gz

v1.0.7

• New option -r to perform assembly using a multiplex DBG with k-mer size up to the given parameter
• Forks are no longer determinized
• Bugfixes
• Optimizations

MBG.tar.gz