This project is what I implemented for my undergraduate thesis. It concern a study of metabolic networks and join a problem in graph theory about a variant of the problem of enumerating all directed acyclic subgraph of a given directed graph.
I built a java library which aims to help the representation and rendering of metabolic network, and graph in general.
The algorithm of major interest is the Tarjan algorithm for the research of strongly connected components. However, there are some other interesting point, like some functional programming paradigms and the test-drive methodology.
All content is written using the English language.
The project can be imported directly into Eclipse (I used the Indigo version) and can be compiled in an automatic way.
In order to use the abstractions is sufficient to reference the project inside your own.
In order to visualize the frame for analyzing the statistical information about a set of metabolic network is sufficient to run as java application the class test/util/ResultViewer.java