Merge pull request #454 from massimoaria/develop

Develop
massimoaria · Apr 30, 2024 · 72d0b18 · 72d0b18
2 parents c7889d5 + 74f1a3c
commit 72d0b18
Show file tree

Hide file tree

Showing 5 changed files with 183 additions and 174 deletions.
diff --git a/NEWS b/NEWS
@@ -1,3 +1,10 @@
+bibliometrix v4.2.1 (Release date: 2024-05-01)
+
+Changes:
+* Major fixes in convert2df for Scopus and Lens export files
+* Many improvements in Biblioshiny tables and figures 
+
+
 bibliometrix v4.2.0 (Release date: 2024-04-18)
 
 Features:

diff --git a/inst/biblioshiny/helpContent.R b/inst/biblioshiny/helpContent.R
@@ -0,0 +1,161 @@
+helpContent <- function(){
+  info <- "<body lang=IT link='#467886' vlink='#96607D' style='tab-interval:35.4pt;
+word-wrap:break-word'>
+  
+  <div class=WordSection1>
+    
+    <p class=MsoNormal align=center style='text-align:center'><b><span lang=EN-US
+    style='font-size:16.0pt;font-family:'Times New Roman',serif;color:black;
+background:white;mso-ansi-language:EN-US'>Supported Bibliographic Databases and
+    Suggested File Formats<o:p></o:p></span></b></p>
+      
+      <p class=MsoNormal><b><span lang=EN-US style='font-size:12.0pt;font-family:
+'Times New Roman',serif;color:black;background:white;mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></b></p>
+      
+      <p class=MsoNormal><b><span lang=EN-US style='font-size:12.0pt;font-family:
+'Times New Roman',serif;color:black;background:white;mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></b></p>
+      
+      <p class=MsoNormal><b><span lang=EN-US style='font-size:12.0pt;font-family:
+'Times New Roman',serif;color:black;background:white;mso-ansi-language:EN-US'>Biblioshiny</span></b><span
+    lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
+color:black;background:white;mso-ansi-language:EN-US'> imports and analyzes
+    collection exported from:<o:p></o:p></span></p>
+      
+      <p class=MsoListParagraphCxSpFirst style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
+    lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
+Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
+    style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+    </span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
+color:black;background:white;mso-ansi-language:EN-US'>Web of Science </span></em><em><span
+    lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'>(</span></em><span style='font-size:12.0pt;font-family:
+'Times New Roman',serif'><a href='http://www.webofscience.com'><span
+                          lang=EN-US style='background:white;mso-ansi-language:EN-US'>www.webofscience.com</span></a></span><em><span
+                          lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'>)</span></em><span lang=EN-US style='font-size:12.0pt;
+font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
+EN-US'><o:p></o:p></span></p>
+      
+      <p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
+    lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
+Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
+    style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+    </span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
+color:black;background:white;mso-ansi-language:EN-US'>Scopus</span></em><em><span
+    lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'> (</span></em><span style='font-size:12.0pt;
+font-family:'Times New Roman',serif'><a href='http://www.scopus.com'><span
+                           lang=EN-US style='background:white;mso-ansi-language:EN-US'>www.scopus.com</span></a></span><em><span
+                           lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'>) </span></em><span lang=EN-US style='font-size:12.0pt;
+font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
+EN-US'><o:p></o:p></span></p>
+      
+      <p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
+    lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
+Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
+    style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+    </span></span></span><![endif]><i><span lang=EN-US style='font-size:12.0pt;
+font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
+EN-US'>OpenAlex</span></i><span lang=EN-US style='font-size:12.0pt;font-family:
+'Times New Roman',serif;color:black;background:white;mso-ansi-language:EN-US'> (</span><span
+                                                                                style='font-size:12.0pt;font-family:'Times New Roman',serif'><a
+                                                                                href='http://www.openalex.org'><span lang=EN-US style='background:white;
+mso-ansi-language:EN-US'>www.openalex.org</span></a></span><span lang=EN-US
+                                                                                style='font-size:12.0pt;font-family:'Times New Roman',serif;color:black;
+background:white;mso-ansi-language:EN-US'>) <o:p></o:p></span></p>
+      
+      <p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
+    lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
+Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
+    style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+    </span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
+color:black;background:white;mso-ansi-language:EN-US'>Dimensions </span></em><em><span
+    lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'>(</span></em><span style='font-size:12.0pt;font-family:
+'Times New Roman',serif'><a href='http://www.dimensions.ai'><span lang=EN-US
+                          style='background:white;mso-ansi-language:EN-US'>www.dimensions.ai</span></a></span><em><span
+                          lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'>) </span></em><span lang=EN-US style='font-size:12.0pt;
+font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
+EN-US'><o:p></o:p></span></p>
+      
+      <p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
+    lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
+Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
+    style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+    </span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
+color:black;background:white;mso-ansi-language:EN-US'>The Lens </span></em><em><span
+    lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'>(</span></em><span style='font-size:12.0pt;font-family:
+'Times New Roman',serif'><a href='http://www.lens.org'><span lang=EN-US
+                          style='background:white;mso-ansi-language:EN-US'>www.lens.org</span></a></span><em><span
+                          lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'>) </span></em><span lang=EN-US style='font-size:12.0pt;
+font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
+EN-US'><o:p></o:p></span></p>
+      
+      <p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
+    lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
+Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
+    style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+    </span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
+color:black;background:white;mso-ansi-language:EN-US'>PubMed</span></em><em><span
+    lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'> (</span></em><span style='font-size:12.0pt;
+font-family:'Times New Roman',serif'><a href='https://pubmed.ncbi.nlm.nih.gov/'><span
+                           lang=EN-US style='background:white;mso-ansi-language:EN-US'>https://pubmed.ncbi.nlm.nih.gov/</span></a></span><em><span
+                           lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
+EN-US;font-style:normal'>) </span></em><span lang=EN-US style='font-size:12.0pt;
+font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
+EN-US'><o:p></o:p></span></p>
+      
+      <p class=MsoListParagraphCxSpLast style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
+    lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
+Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
+    style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+    </span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
+color:black;background:white;mso-ansi-language:EN-US'>Cochrane Library</span></em><span
+    lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
+color:black;background:white;mso-ansi-language:EN-US'> (</span><span
+                                                        style='font-size:12.0pt;font-family:'Times New Roman',serif'><a
+                                                        href='http://www.cochranelibrary.com/'><span lang=EN-US style='background:white;
+mso-ansi-language:EN-US'>www.cochranelibrary.com/</span></a></span><span
+                                                        lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
+color:black;background:white;mso-ansi-language:EN-US'>) <o:p></o:p></span></p>
+      
+      <p class=MsoNormal><span lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
+color:black;background:white;mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></p>
+      
+      <p class=MsoNormal><span lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
+color:black;background:white;mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></p>
+      
+      <p style='margin-top:6.0pt;margin-right:0cm;margin-bottom:6.0pt;margin-left:
+0cm;background:white'><i><span lang=EN-US style='font-size:12.0pt;color:black;
+mso-ansi-language:EN-US'>Web of Science</span></i><span lang=EN-US
+    style='font-size:12.0pt;color:black;mso-ansi-language:EN-US'>, <i>Scopus</i>
+      and <i>OpenAlex</i> allow the user to export the complete set of metadata. This
+    means that it will be possible to perform all analyses implemented in biblioshiny.
+    <o:p></o:p></span></p>
+      
+      <p style='margin-top:6.0pt;margin-right:0cm;margin-bottom:6.0pt;margin-left:
+0cm;background:white'><span lang=EN-US style='font-size:12.0pt;color:black;
+mso-ansi-language:EN-US'>Some other databases, such as Dimensions, PubMed and
+    Cochrane Library, export just a limited set of metadata types which implies
+    some limitations in the choice of the analyses to carry out.<o:p></o:p></span></p>
+      
+      <p style='margin-top:6.0pt;margin-right:0cm;margin-bottom:6.0pt;margin-left:
+0cm;background:white'><span lang=EN-US style='font-size:12.0pt;color:black;
+mso-ansi-language:EN-US'>In the following table, for each database we repot the
+    file formats supported and the metadata contained in each. Finally, the
+    suggested file format is reported.<o:p></o:p></span></p>
+      
+      <p class=MsoNormal><span lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
+mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></p>
+      
+      </div>
+      
+      </body>"
+
+  return(list(info=info))
+}
diff --git a/inst/biblioshiny/server.R b/inst/biblioshiny/server.R
@@ -3376,7 +3376,7 @@ To ensure the functionality of Biblioshiny,
       list_plot <- list(values$degreePlot)
       res <- addDataScreenWb(list_df, wb=values$wb, sheetname=sheetname)
       #values$wb <- res$wb
-      values$wb <- addGgplotsWb(list_plot, wb=res$wb, sheetname, col=res$col+16, width=10, height=7, dpi=75)
+      values$wb <- addGgplotsWb(list_plot, wb=res$wb, res$sheetname, col=res$col+16, width=10, height=7, dpi=75)
       #values$fileTFP <- screenSh(selector = "#cocPlot") ## screenshot
       values$fileCOC <- screenSh(values$COCnetwork$VIS, zoom = 2, type="vis")
       values$list_file <- rbind(values$list_file, c(sheetname=res$sheetname,values$fileCOC,res$col))
@@ -4121,7 +4121,7 @@ To ensure the functionality of Biblioshiny,
       list_plot <- list(values$degreePlot)
       res <- addDataScreenWb(list_df, wb=values$wb, sheetname=sheetname)
       #values$wb <- res$wb
-      values$wb <- addGgplotsWb(list_plot, wb=res$wb, sheetname, col=res$col+15, width=12, height=8, dpi=75)
+      values$wb <- addGgplotsWb(list_plot, wb=res$wb, res$sheetname, col=res$col+15, width=12, height=8, dpi=75)
       #values$fileTFP <- screenSh(selector = "#cocitPlot") ## screenshot
       values$fileCOCIT <- screenSh(values$COCITnetwork$VIS, zoom = 2, type="vis")
       values$list_file <- rbind(values$list_file, c(sheetname=res$sheetname,values$fileCOCIT,res$col))
@@ -4252,7 +4252,7 @@ To ensure the functionality of Biblioshiny,
       list_df <- list(values$colnet$params, values$colnet$cluster_res)
       list_plot <- list(values$degreePlot)
       res <- addDataScreenWb(list_df, wb=values$wb, sheetname=sheetname)
-      values$wb <- addGgplotsWb(list_plot, wb=res$wb, sheetname, col=res$col+15, width=12, height=8, dpi=75)
+      values$wb <- addGgplotsWb(list_plot, wb=res$wb, res$sheetname, col=res$col+15, width=12, height=8, dpi=75)
       #values$fileTFP <- screenSh(selector = "#colPlot") ## screenshot
       values$fileCOL <- screenSh(values$COLnetwork$VIS, zoom = 2, type="vis")
       values$list_file <- rbind(values$list_file, c(sheetname=res$sheetname,values$fileCOL,res$col))