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pplacer should respect --out-dir when using --write-masked #317

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metasoarous opened this issue Nov 4, 2013 · 0 comments
Closed

pplacer should respect --out-dir when using --write-masked #317

metasoarous opened this issue Nov 4, 2013 · 0 comments

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@metasoarous
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Currently, --out-dir is not respected in the alignment output when specifying --write-masked (presumably this is the case with --write-pre-masked as well).

A --prefix option could be helpful when using these flags in some cases as well.
matsen pushed a commit that referenced this issue Nov 5, 2013
Making --write-masked respect output dir.
fbcda2b 
Closes #317.

cc @metasoarous
matsen pushed a commit that referenced this issue Nov 5, 2013
Making --write-masked respect output dir.
a2cc867 
Closes #317.

cc @metasoarous
@matsen matsen closed this as completed Feb 6, 2014
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@metasoarous @matsen