0.2.3

Release notes for fbc_curation 0.2.3

We are pleased to release the next version of fbc_curation and runfrog (https://runfrog.de).
The project fbc_curation implements the FROG analysis for reproducibility of constraint-based models in Python.

For more information see https://github.com/matthiaskoenig/fbc_curation
and https://fbc-curation.readthedocs.io.

This release includes the following changes:

• Fix #96, incorrect FVA flux values. Clarification and documentation added.

Your fbc_curation team

0.2.1

Release notes for fbc_curation 0.2.1

We are pleased to release the next version of fbc_curation and runfrog (https://runfrog.de).
The project fbc_curation implements the FROG analysis for reproducibility of constraint-based models in Python.

For more information see https://github.com/matthiaskoenig/fbc_curation
and https://fbc-curation.readthedocs.io.

This release includes the following changes:

• Fix #86, update readthedocs configuration
• Fix #88, tests for workers added
• Fix #74, better file naming of OMEX
• Fix #90, NaN serialization bug
• Fix #89, docker container and dependency updates
• Fix #87, updated website dependencies
• update cobrapy==0.26.0
• update github actions
• python3.11 support
• Fix #94, models named according to input files

Your fbc_curation team

0.2.0

Release notes for fbc_curation 0.2.0

We are pleased to release the next version of fbc_curation and runfrog (https://runfrog.de).
The project fbc_curation implements the FROG analysis for reproducibility of constraint-based models in Python.

For more information see https://github.com/matthiaskoenig/fbc_curation
and https://fbc-curation.readthedocs.io.

This release includes the following changes:

• complete refactoring of data model to support pydantic
• domain secured & docker deployment (https://runfrog.de)
• rich logging
• fraction_optimum added to FVA
• Fix #43, Fix #76 icon added
• Fix #66, Fix #61 upgrade cameo to 0.13.6
• Fix #65
• dropping Python 3.6, 3.7 support
• adding python 3.8, 3.9, 3.10 support
• Fix #77, renaming master branch to main
• Fix #69, markupsafe import bug
• Fix #78, fix failing tests
• Fix #79, fix flake8 issues
• Fix #80, fixed mypy issues
• updated documentation, fix #82, fix #73
• new package release, Fix #57

Your fbc_curation team

0.1.6

Release notes for fbc_curation 0.1.6

• repackaging example files for distribution with pypi (Fix #34)

0.1.3

Release notes for fbc_curation 0.1.3

This release incorporates most of the feedback from the
COMBINE2020 session. In addition to many bugfixes metadata is now
encoded in a metadata.json.

• support for tool metadata as metadata.json
• switch to github actions from travis
• code coverage reports
• readthedocs documentation
• isort, black, flake8
• distributing example files
• clarification FVA maximum
• cobrapy bugfix (indexing)
• using filename instead of model id in reference files
• added reference flux to FVA
• fixed non-negative FVA results
• using reaction ids in results

fbc_curation-v0.1.0

v0.1.0

• result validation against schema
• second solver implementation (cameo)
• improved user interface and documentation
• comparison of results
• support for reference files
• bugfixes

fbc_curation-v0.0.6

v0.0.6

• fixed fbc_curation_example bug #11
• reproducible tolerances for examples

fbc_curation-v0.0.5

v0.0.5

• major refactoring
• handling solver exceptions
• improved file format & naming
• support for additional models
• minimal support for multiple objective functions

fbc_curation-v0.0.4

v0.0.4

• package data & cleanup

fbc_curation-v0.0.3

v0.0.3

• bugfixes
• example data included in package
• licenses and references added