Merge pull request #21 from maxplanck-ie/develop

added mode alignment to RNAseq cmd
maxplanck-ie · Sep 17, 2018 · cb4b7cd · cb4b7cd
2 parents 078869b + 3553768
commit cb4b7cd
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/app.R b/app.R
@@ -185,7 +185,7 @@ server <- function(input, output, session) {
 
            else if(values$inWorkflow=="RNA-seq"){
 
-             values$command<-sprintf("mkdir -p %s ; %s ; %s ; %s -i %s -o %s --DE %s %s ",indir,link_cmd,cp_sInfo_cmd,path_to_exec,indir,outdir,values$sInfo_in,values$genome) 
+             values$command<-sprintf("mkdir -p %s ; %s ; %s ; %s --mode alignment -i %s -o %s --DE %s %s ",indir,link_cmd,cp_sInfo_cmd,path_to_exec,indir,outdir,values$sInfo_in,values$genome) 
              output$command<-renderText({ values$command })
 
            } #end of RNA-seq