Formatting

back/src/whombat/api/audio.py

@@ -171,9 +171,9 @@ def load_clip_bytes(
                 header = b""
 
             if bytes_to_load < 0:
-                return header, 0, header_size, filesize
+                return header, 0, len(header), filesize
 
-            current_position = start_position + start - header_size
+            current_position = start_position + max(start - header_size, 0)
             bytes_to_load = min(
                 bytes_to_load,
                 end_position - current_position,

back/src/whombat/api/datasets.py

@@ -15,9 +15,9 @@
 from whombat.api.common import BaseAPI
 from whombat.api.recordings import recordings
 from whombat.core import files
-from whombat.system import get_settings
 from whombat.filters.base import Filter
 from whombat.filters.recordings import DatasetFilter
+from whombat.system import get_settings
 
 __all__ = [
     "DatasetAPI",

back/src/whombat/api/evaluations.py

@@ -20,10 +20,10 @@
 )
 from whombat.api.evaluation_sets import evaluation_sets
 from whombat.api.features import features
+from whombat.api.io.aoef.evaluations import import_evaluation
 from whombat.api.model_runs import model_runs
 from whombat.filters.base import Filter
 from whombat.filters.clip_evaluations import EvaluationFilter
-from whombat.api.io.aoef.evaluations import import_evaluation
 
 
 class EvaluationAPI(

back/src/whombat/api/io/aoef/model_runs.py

@@ -11,7 +11,9 @@
 from whombat.api.io.aoef.clips import get_clips
 from whombat.api.io.aoef.features import get_feature_names
 from whombat.api.io.aoef.recordings import get_recordings
-from whombat.api.io.aoef.sound_event_predictions import get_sound_event_predictions
+from whombat.api.io.aoef.sound_event_predictions import (
+    get_sound_event_predictions,
+)
 from whombat.api.io.aoef.sound_events import get_sound_events
 from whombat.api.io.aoef.tags import import_tags
 from whombat.api.io.aoef.users import import_users

back/src/whombat/core/images.py

@@ -7,7 +7,6 @@
 from PIL import Image as img
 from PIL.Image import Image
 
-
 __all__ = [
     "array_to_image",
     "image_to_buffer",

back/src/whombat/routes/__init__.py

@@ -31,7 +31,6 @@
 from whombat.routes.tags import tags_router
 from whombat.routes.user_runs import user_runs_router
 from whombat.routes.users import get_users_router
-
 from whombat.system.settings import Settings
 
 __all__ = [

back/src/whombat/routes/annotation_projects.py

@@ -7,9 +7,9 @@
 from soundevent.io.aoef import to_aeof
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session, WhombatSettings
-from whombat.filters.annotation_projects import AnnotationProjectFilter
 from whombat.api.io import aoef
+from whombat.filters.annotation_projects import AnnotationProjectFilter
+from whombat.routes.dependencies import Session, WhombatSettings
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/annotation_tasks.py

@@ -5,9 +5,9 @@
 from soundevent.data import AnnotationState
 
 from whombat import api, schemas
-from whombat.routes.dependencies import ActiveUser, Session
 from whombat.filters.annotation_tasks import AnnotationTaskFilter
 from whombat.filters.clips import UUIDFilter as ClipUUIDFilter
+from whombat.routes.dependencies import ActiveUser, Session
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/auth.py

@@ -1,7 +1,7 @@
 """Module containing the router for the Auth."""
 from fastapi import APIRouter
 
-from whombat.routes.dependencies.auth import get_users_api, get_auth_backend
+from whombat.routes.dependencies.auth import get_auth_backend, get_users_api
 from whombat.schemas.users import User, UserCreate
 from whombat.system.settings import Settings
 

back/src/whombat/routes/clip_annotations.py

@@ -4,8 +4,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import ActiveUser, Session
 from whombat.filters.clip_annotations import ClipAnnotationFilter
+from whombat.routes.dependencies import ActiveUser, Session
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/clip_evaluations.py

@@ -4,8 +4,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session
 from whombat.filters.clip_evaluations import ClipEvaluationFilter
+from whombat.routes.dependencies import Session
 from whombat.routes.types import Limit, Offset
 
 clip_evaluations_router = APIRouter()

back/src/whombat/routes/clip_predictions.py

@@ -4,8 +4,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session
 from whombat.filters.clip_predictions import ClipPredictionFilter
+from whombat.routes.dependencies import Session
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/clips.py

@@ -4,9 +4,9 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session
 from whombat.filters.clips import ClipFilter
 from whombat.filters.recordings import UUIDFilter as RecordingUUIDFilter
+from whombat.routes.dependencies import Session
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/datasets.py

@@ -11,9 +11,9 @@
 from soundevent.io.aoef import DatasetObject, to_aeof
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session, WhombatSettings
-from whombat.filters.datasets import DatasetFilter
 from whombat.api.io import aoef
+from whombat.filters.datasets import DatasetFilter
+from whombat.routes.dependencies import Session, WhombatSettings
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/evaluation_sets.py

@@ -8,9 +8,9 @@
 from soundevent.io.aoef import to_aeof
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session, WhombatSettings
-from whombat.filters.evaluation_sets import EvaluationSetFilter
 from whombat.api.io import aoef
+from whombat.filters.evaluation_sets import EvaluationSetFilter
+from whombat.routes.dependencies import Session, WhombatSettings
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/evaluations.py

@@ -4,8 +4,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session
 from whombat.filters.evaluations import EvaluationFilter
+from whombat.routes.dependencies import Session
 from whombat.routes.types import Limit, Offset
 
 evaluations_router = APIRouter()

back/src/whombat/routes/features.py

@@ -3,8 +3,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session
 from whombat.filters.feature_names import FeatureNameFilter
+from whombat.routes.dependencies import Session
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/model_runs.py

@@ -5,9 +5,9 @@
 from fastapi import APIRouter, Depends, UploadFile
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session, WhombatSettings
-from whombat.filters.model_runs import ModelRunFilter
 from whombat.api.io import aoef
+from whombat.filters.model_runs import ModelRunFilter
+from whombat.routes.dependencies import Session, WhombatSettings
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/notes.py

@@ -4,8 +4,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session
 from whombat.filters.notes import NoteFilter
+from whombat.routes.dependencies import Session
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/recordings.py

@@ -4,8 +4,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import ActiveUser, Session
 from whombat.filters.recordings import RecordingFilter
+from whombat.routes.dependencies import ActiveUser, Session
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/sound_event_evaluations.py

@@ -2,8 +2,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session
 from whombat.filters.sound_event_evaluations import SoundEventEvaluationFilter
+from whombat.routes.dependencies import Session
 from whombat.routes.types import Limit, Offset
 
 sound_event_evaluations_router = APIRouter()

back/src/whombat/routes/sound_event_predictions.py

@@ -4,8 +4,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session
 from whombat.filters.sound_event_predictions import SoundEventPredictionFilter
+from whombat.routes.dependencies import Session
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/routes/tags.py

@@ -2,9 +2,9 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import Session
 from whombat.filters.recording_tags import RecordingTagFilter
 from whombat.filters.tags import TagFilter
+from whombat.routes.dependencies import Session
 from whombat.routes.types import Limit, Offset
 
 tags_router = APIRouter()

back/src/whombat/routes/user_runs.py

@@ -4,8 +4,8 @@
 from fastapi import APIRouter, Depends
 
 from whombat import api, schemas
-from whombat.routes.dependencies import ActiveUser, Session
 from whombat.filters.user_runs import UserRunFilter
+from whombat.routes.dependencies import ActiveUser, Session
 from whombat.routes.types import Limit, Offset
 
 __all__ = [

back/src/whombat/system/boot.py

@@ -107,14 +107,10 @@ async def whombat_init(settings: Settings, _: FastAPI):
         print_first_run_message(settings)
 
         if settings.open_on_startup and not settings.dev:
-            webbrowser.open(
-                f"http://{settings.host}:{settings.port}/first/"
-            )
+            webbrowser.open(f"http://{settings.host}:{settings.port}/first/")
         return
 
     print_ready_message(settings)
 
     if settings.open_on_startup and not settings.dev:
-        webbrowser.open(
-            f"http://{settings.host}:{settings.port}/"
-        )
+        webbrowser.open(f"http://{settings.host}:{settings.port}/")

back/src/whombat/system/settings.py

@@ -2,10 +2,10 @@
 
 We are using pydantic to define our settings.
 """
+import warnings
 from functools import lru_cache
 from pathlib import Path
 from typing import Tuple, Type
-import warnings
 
 from pydantic import ValidationError
 from pydantic_settings import (
@@ -79,7 +79,7 @@ class Settings(BaseSettings):
     port: int = 5000
     """Port on which the backend is running."""
 
-    domain: str = "http://localhost"
+    domain: str = "localhost"
     """Domain on which the backend is running."""
 
     log_config: Path = Path("logging.conf")

back/tests/test_api/test_audio.py

@@ -1,6 +1,6 @@
 import struct
 
-from whombat.api.audio import HEADER_FORMAT, CHUNK_SIZE, load_clip_bytes
+from whombat.api.audio import CHUNK_SIZE, HEADER_FORMAT, load_clip_bytes
 
 
 def test_load_clip_bytes(random_wav_factory):
@@ -35,7 +35,7 @@ def test_load_clip_bytes(random_wav_factory):
     assert len(loaded_bytes) == len(read_bytes)
     assert loaded_bytes == read_bytes
     assert start_ == start
-    assert end_ == end
+    assert end_ == end - 1
     assert filesize == path.stat().st_size
 
 
@@ -66,7 +66,7 @@ def test_load_clip_bytes_with_header(random_wav_factory):
 
     assert len(loaded_bytes) == len(read_bytes)
     assert start_ == start
-    assert end_ == end
+    assert end_ == end - 1
     assert filesize == path.stat().st_size
 
 
@@ -87,25 +87,21 @@ def test_stream_a_whole_audio_file(random_wav_factory):
     filesize = None
     parts = []
     while True:
-        end = start + 1024 * 1024
-
-        if filesize is not None and end > filesize:
-            end = filesize
-
-        part, start, end, filesize = load_clip_bytes(
+        part, start, _, filesize = load_clip_bytes(
             path=path,
             start=start,
-            end=end,
         )
         parts.append(part)
-        start = end
+        start = start + len(part)
 
         assert filesize == true_filesize
 
         if not part or start >= filesize:
             break
 
-    assert b"".join(parts) == full_bytes
+    streamed = b"".join(parts)
+    assert len(streamed) == len(full_bytes)
+    assert streamed == full_bytes
 
 
 def test_stream_a_whole_audio_file_with_non_1_speed(random_wav_factory):
@@ -127,19 +123,13 @@ def test_stream_a_whole_audio_file_with_non_1_speed(random_wav_factory):
     filesize = None
     parts = []
     while True:
-        end = start + CHUNK_SIZE
-
-        if filesize is not None and end > filesize:
-            end = filesize
-
-        part, start, end, filesize = load_clip_bytes(
+        part, start, _, filesize = load_clip_bytes(
             path=path,
             start=start,
-            end=end,
             speed=speed,
         )
         parts.append(part)
-        start = end
+        start = start + len(part)
 
         assert filesize == true_filesize
 
@@ -169,7 +159,7 @@ def test_stream_a_whole_audio_file_with_non_1_speed(random_wav_factory):
     orig_header = struct.unpack(HEADER_FORMAT, full_bytes[:44])
     streamed_header = struct.unpack(HEADER_FORMAT, streamed[:44])
 
-    for (field, h1, h2) in zip(fields, orig_header, streamed_header):
+    for field, h1, h2 in zip(fields, orig_header, streamed_header):
         if field == "samplerate":
             assert int(h1 * speed) == h2
             continue

back/tests/test_routers/conftest.py

@@ -3,9 +3,8 @@
 import pytest
 from fastapi.testclient import TestClient
 
-from whombat.routes.dependencies import get_settings
 from whombat.system import create_app
-from whombat.system.settings import Settings
+from whombat.system.settings import Settings, get_settings
 
 
 @pytest.fixture