Format: formatted with black v24

back/src/whombat/api/__init__.py

@@ -1,4 +1,5 @@
 """Python API for Whombat."""
+
 from whombat.api.annotation_projects import annotation_projects
 from whombat.api.annotation_tasks import annotation_tasks
 from whombat.api.audio import load_audio, load_clip_bytes

back/src/whombat/api/audio.py

@@ -1,4 +1,5 @@
 """API functions to load audio."""
+
 import struct
 from pathlib import Path
 

back/src/whombat/api/clip_evaluations.py

@@ -1,4 +1,5 @@
 """API functions to interact with clip evaluations."""
+
 from pathlib import Path
 from typing import Sequence
 from uuid import UUID

back/src/whombat/api/datasets.py

@@ -1,4 +1,5 @@
 """API functions for interacting with datasets."""
+
 import datetime
 import uuid
 import warnings

back/src/whombat/api/evaluation_sets.py

@@ -1,4 +1,5 @@
 """API functions for interacting with evaluation sets."""
+
 import uuid
 from pathlib import Path
 from typing import Sequence

back/src/whombat/api/io/aoef/clips.py

@@ -17,10 +17,12 @@
 
 async def get_clips(
     session: AsyncSession,
-    obj: AnnotationSetObject
-    | EvaluationObject
-    | PredictionSetObject
-    | AnnotationProjectObject,
+    obj: (
+        AnnotationSetObject
+        | EvaluationObject
+        | PredictionSetObject
+        | AnnotationProjectObject
+    ),
     recordings: dict[UUID, int],
     feature_names: dict[str, int],
     should_import: bool = True,

back/src/whombat/api/io/aoef/features.py

@@ -15,10 +15,12 @@
 
 async def get_feature_names(
     session: AsyncSession,
-    obj: AnnotationSetObject
-    | EvaluationObject
-    | PredictionSetObject
-    | RecordingSetObject,
+    obj: (
+        AnnotationSetObject
+        | EvaluationObject
+        | PredictionSetObject
+        | RecordingSetObject
+    ),
 ) -> dict[str, int]:
     names: set[str] = set(feat.value for feat in GeometricFeature)
 

back/src/whombat/api/model_runs.py

@@ -1,4 +1,5 @@
 """API functions to interact with model runs."""
+
 from pathlib import Path
 from typing import Sequence
 from uuid import UUID

back/src/whombat/api/recordings.py

@@ -1,4 +1,5 @@
 """API functions for interacting with recordings."""
+
 import datetime
 import logging
 from functools import partial

back/src/whombat/api/sessions.py

@@ -1,4 +1,5 @@
 """Python API to manage database sessions."""
+
 from contextlib import asynccontextmanager
 from typing import AsyncGenerator
 

back/src/whombat/api/sound_event_annotations.py

@@ -269,9 +269,11 @@ async def to_soundevent(
         return data.SoundEventAnnotation(
             uuid=annotation.uuid,
             created_on=annotation.created_on,
-            created_by=users.to_soundevent(annotation.created_by)
-            if annotation.created_by
-            else None,
+            created_by=(
+                users.to_soundevent(annotation.created_by)
+                if annotation.created_by
+                else None
+            ),
             sound_event=await sound_events.to_soundevent(
                 session,
                 annotation.sound_event,

back/src/whombat/api/sound_event_evaluations.py

@@ -1,4 +1,5 @@
 """API functions to interact with sound event evaluations."""
+
 from pathlib import Path
 from uuid import UUID
 

back/src/whombat/api/sound_events.py

@@ -345,9 +345,11 @@ async def update_geometric_features(
         sound_event = sound_event.model_copy(
             update=dict(
                 features=[
-                    f
-                    if f.name not in feature_mapping
-                    else feature_mapping[f.name]
+                    (
+                        f
+                        if f.name not in feature_mapping
+                        else feature_mapping[f.name]
+                    )
                     for f in sound_event.features
                 ]
             )

back/src/whombat/api/spectrograms.py

@@ -1,4 +1,5 @@
 """API functions to generate spectrograms."""
+
 from pathlib import Path
 
 import numpy as np

back/src/whombat/api/tags.py

@@ -1,4 +1,5 @@
 """API functions to interact with tags."""
+
 from typing import Any, Sequence
 
 from soundevent import data

back/src/whombat/api/users.py

@@ -1,4 +1,5 @@
 """Whombat Python API to interact with user objects in the database."""
+
 import secrets
 from uuid import UUID
 

back/src/whombat/app.py

@@ -2,6 +2,7 @@
 
 It contains the FastAPI instance and the root endpoint.
 """
+
 from whombat.system import create_app, get_settings
 
 settings = get_settings()

back/src/whombat/cache.py

@@ -1,4 +1,5 @@
 """Cache functions."""
+
 from contextlib import AbstractContextManager
 from functools import wraps
 from typing import (

back/src/whombat/core/files.py

@@ -1,4 +1,5 @@
 """File handling functions."""
+
 import logging
 from dataclasses import dataclass
 from pathlib import Path

back/src/whombat/exceptions.py

@@ -1,6 +1,5 @@
 """Custom exceptions for Whombat."""
 
-
 __all__ = [
     "NotFoundError",
     "DuplicateObjectError",

back/src/whombat/filters/annotation_tasks.py

@@ -1,4 +1,5 @@
 """Filters for Annotation Tasks."""
+
 from uuid import UUID
 
 from soundevent import data

back/src/whombat/filters/clip_predictions.py

@@ -1,4 +1,5 @@
 """Filters for Clip Predictions."""
+
 from uuid import UUID
 
 from sqlalchemy import Select, and_, select

back/src/whombat/filters/evaluations.py

@@ -1,4 +1,5 @@
 """Filters for Evaluations."""
+
 from uuid import UUID
 
 from sqlalchemy import Select, or_, select

back/src/whombat/filters/feature_names.py

@@ -1,4 +1,5 @@
 """Filters for featuren names."""
+
 from uuid import UUID
 
 from sqlalchemy import Select

back/src/whombat/filters/notes.py

@@ -1,4 +1,5 @@
 """Filters for Notes."""
+
 from uuid import UUID
 
 from sqlalchemy import Select

back/src/whombat/filters/sound_event_annotations.py

@@ -1,4 +1,5 @@
 """Filters for Annotations."""
+
 from uuid import UUID
 
 from sqlalchemy import Select, select, tuple_

back/src/whombat/filters/sound_event_predictions.py

@@ -1,4 +1,5 @@
 """Filters for Predictions."""
+
 from uuid import UUID
 
 from sqlalchemy import Select, and_

back/src/whombat/filters/sound_events.py

@@ -1,4 +1,5 @@
 """Filters for Sound Events."""
+
 from uuid import UUID
 
 from sqlalchemy import Select

back/src/whombat/filters/tags.py

@@ -1,4 +1,5 @@
 """Filters for tags."""
+
 from uuid import UUID
 
 from sqlalchemy import Select

back/src/whombat/migrations/versions/03a1d239e06e_first_migration.py

@@ -5,6 +5,7 @@
 Create Date: 2024-01-10 20:08:09.823754
 
 """
+
 from typing import Sequence, Union
 
 import fastapi_users_db_sqlalchemy.generics

back/src/whombat/models/__init__.py

@@ -6,6 +6,7 @@
 models into other modules without having to import the entire database
 module.
 """
+
 from whombat.models.annotation_project import (
     AnnotationProject,
     AnnotationProjectTag,

back/src/whombat/models/annotation_project.py

@@ -105,12 +105,12 @@ class AnnotationProject(Base):
     )
 
     # Secondary relationships
-    annotation_project_tags: orm.Mapped[
-        list["AnnotationProjectTag"]
-    ] = orm.relationship(
-        "AnnotationProjectTag",
-        default_factory=list,
-        cascade="all, delete-orphan",
+    annotation_project_tags: orm.Mapped[list["AnnotationProjectTag"]] = (
+        orm.relationship(
+            "AnnotationProjectTag",
+            default_factory=list,
+            cascade="all, delete-orphan",
+        )
     )
 
 

back/src/whombat/models/annotation_task.py

@@ -107,15 +107,15 @@ class AnnotationTask(Base):
         init=False,
         single_parent=True,
     )
-    status_badges: orm.Mapped[
-        list["AnnotationStatusBadge"]
-    ] = orm.relationship(
-        back_populates="annotation_task",
-        cascade="all",
-        lazy="joined",
-        init=False,
-        repr=False,
-        default_factory=list,
+    status_badges: orm.Mapped[list["AnnotationStatusBadge"]] = (
+        orm.relationship(
+            back_populates="annotation_task",
+            cascade="all",
+            lazy="joined",
+            init=False,
+            repr=False,
+            default_factory=list,
+        )
     )
 
 

back/src/whombat/models/clip_annotation.py

@@ -96,21 +96,21 @@ class ClipAnnotation(Base):
     )
 
     # Secondary relations
-    clip_annotation_notes: orm.Mapped[
-        list["ClipAnnotationNote"]
-    ] = orm.relationship(
-        default_factory=list,
-        cascade="all, delete-orphan",
-        repr=False,
-        init=False,
-    )
-    clip_annotation_tags: orm.Mapped[
-        list["ClipAnnotationTag"]
-    ] = orm.relationship(
-        default_factory=list,
-        cascade="all, delete-orphan",
-        repr=False,
-        init=False,
+    clip_annotation_notes: orm.Mapped[list["ClipAnnotationNote"]] = (
+        orm.relationship(
+            default_factory=list,
+            cascade="all, delete-orphan",
+            repr=False,
+            init=False,
+        )
+    )
+    clip_annotation_tags: orm.Mapped[list["ClipAnnotationTag"]] = (
+        orm.relationship(
+            default_factory=list,
+            cascade="all, delete-orphan",
+            repr=False,
+            init=False,
+        )
     )
 
     # Backrefs
@@ -127,14 +127,14 @@ class ClipAnnotation(Base):
         default_factory=list,
         viewonly=True,
     )
-    evaluation_set_annotations: orm.Mapped[
-        list["EvaluationSetAnnotation"]
-    ] = orm.relationship(
-        back_populates="clip_annotation",
-        init=False,
-        repr=False,
-        default_factory=list,
-        cascade="all, delete-orphan",
+    evaluation_set_annotations: orm.Mapped[list["EvaluationSetAnnotation"]] = (
+        orm.relationship(
+            back_populates="clip_annotation",
+            init=False,
+            repr=False,
+            default_factory=list,
+            cascade="all, delete-orphan",
+        )
     )
 
 

back/src/whombat/models/clip_evaluation.py

@@ -97,15 +97,15 @@ class ClipEvaluation(Base):
         init=False,
         lazy="selectin",
     )
-    sound_event_evaluations: orm.Mapped[
-        list[SoundEventEvaluation]
-    ] = orm.relationship(
-        back_populates="clip_evaluation",
-        cascade="all",
-        lazy="joined",
-        init=False,
-        repr=False,
-        default_factory=list,
+    sound_event_evaluations: orm.Mapped[list[SoundEventEvaluation]] = (
+        orm.relationship(
+            back_populates="clip_evaluation",
+            cascade="all",
+            lazy="joined",
+            init=False,
+            repr=False,
+            default_factory=list,
+        )
     )
     metrics: orm.Mapped[list["ClipEvaluationMetric"]] = orm.relationship(
         back_populates="clip_evaluation",

back/src/whombat/models/dataset.py

@@ -94,15 +94,15 @@ class Dataset(Base):
     )
 
     # Secondary relations
-    dataset_recordings: orm.Mapped[
-        list["DatasetRecording"]
-    ] = orm.relationship(
-        "DatasetRecording",
-        init=False,
-        repr=False,
-        back_populates="dataset",
-        cascade="all, delete-orphan",
-        default_factory=list,
+    dataset_recordings: orm.Mapped[list["DatasetRecording"]] = (
+        orm.relationship(
+            "DatasetRecording",
+            init=False,
+            repr=False,
+            back_populates="dataset",
+            cascade="all, delete-orphan",
+            default_factory=list,
+        )
     )