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Remove output of library() calls
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vinisalazar committed Nov 18, 2024
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105 changes: 0 additions & 105 deletions docs/tutorials/seurat-go/seurat-go.md
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Expand Up @@ -87,117 +87,12 @@ BiocManager::install("enrichplot")
```r
# load libraries
library(Seurat)

## Loading required package: SeuratObject
## Loading required package: sp
## 'SeuratObject' was built under R 4.4.0 but the current version is
## 4.4.1; it is recomended that you reinstall 'SeuratObject' as the ABI
## for R may have changed
## 'SeuratObject' was built with package 'Matrix' 1.7.0 but the current
## version is 1.7.1; it is recomended that you reinstall 'SeuratObject' as
## the ABI for 'Matrix' may have changed
##
## Attaching package: 'SeuratObject'
## The following objects are masked from 'package:base':
##
## intersect, t

library(Signac)

## ── Installed datasets ──────────────────────────────── SeuratData v0.2.2.9001 ──
## ✔ ifnb 3.1.0 ✔ pbmcMultiome 0.1.4
## ────────────────────────────────────── Key ─────────────────────────────────────
## ✔ Dataset loaded successfully
## ❯ Dataset built with a newer version of Seurat than installed
## ❓ Unknown version of Seurat installed

library(EnsDb.Hsapiens.v86)

## Loading required package: ensembldb
## Loading required package: BiocGenerics
##
## Attaching package: 'BiocGenerics'
## The following object is masked from 'package:SeuratObject':
##
## intersect
## The following objects are masked from 'package:stats':
##
## IQR, mad, sd, var, xtabs
## The following objects are masked from 'package:base':
##
## anyDuplicated, aperm, append, as.data.frame, basename, cbind,
## colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
## get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
## match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
## Position, rank, rbind, Reduce, rownames, sapply, setdiff, table,
## tapply, union, unique, unsplit, which.max, which.min
## Loading required package: GenomicRanges
## Loading required package: stats4
## Loading required package: S4Vectors
##
## Attaching package: 'S4Vectors'
## The following object is masked from 'package:utils':
##
## findMatches
## The following objects are masked from 'package:base':
##
## expand.grid, I, unname
## Loading required package: IRanges
##
## Attaching package: 'IRanges'
## The following object is masked from 'package:sp':
##
## %over%
## Loading required package: GenomeInfoDb
## Loading required package: GenomicFeatures
## Loading required package: AnnotationDbi
## Loading required package: Biobase
## Welcome to Bioconductor
##
## Vignettes contain introductory material; view with
## 'browseVignettes()'. To cite Bioconductor, see
## 'citation("Biobase")', and for packages 'citation("pkgname")'.
## Loading required package: AnnotationFilter
##
## Attaching package: 'ensembldb'
## The following object is masked from 'package:stats':
##
## filter

library(ggplot2)
library(cowplot)
library(clusterProfiler)

##
## clusterProfiler v4.12.6 Learn more at https://yulab-smu.top/contribution-knowledge-mining/
##
## Please cite:
##
## S Xu, E Hu, Y Cai, Z Xie, X Luo, L Zhan, W Tang, Q Wang, B Liu, R Wang,
## W Xie, T Wu, L Xie, G Yu. Using clusterProfiler to characterize
## multiomics data. Nature Protocols. 2024, doi:10.1038/s41596-024-01020-z
##
## Attaching package: 'clusterProfiler'
## The following objects are masked from 'package:ensembldb':
##
## filter, select
## The following object is masked from 'package:AnnotationDbi':
##
## select
## The following object is masked from 'package:IRanges':
##
## slice
## The following object is masked from 'package:S4Vectors':
##
## rename
## The following object is masked from 'package:stats':
##
## filter

library(org.Hs.eg.db)

##

library(enrichplot)
```

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