Merge pull request #200 from vinisalazar/seurat-de

Add new workshop: Seurat DE
melbournebioinformatics · Oct 23, 2024 · 94a2d53 · 94a2d53
2 parents 33c74dc + 7432b26
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diff --git a/docs/tutorials/git/git.md b/docs/tutorials/git/git.md
@@ -1054,15 +1054,16 @@ In regards to the second strategy of using existing solutions, you can do most G
 #### Do
 - Write good commit messages
     - Say **why**, not **what** you changed
+    - Document as you code
 - Make small changes
 - Commit often
-- Think about the reviewer
-- Document as you code
+- Ignore large files (use `.gitignore`)
 
 #### Don't
 - Make vague commit messages
 - Accumulate unrelated changes in a single commit
 - Let things go stale – delete or "stash" them
+- Commit large files to history – they will be there forever.
 
 !!! note "Keypoints"
 

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diff --git a/docs/tutorials/seurat-de/seurat-de.md b/docs/tutorials/seurat-de/seurat-de.md
diff --git a/mkdocs.yml b/mkdocs.yml
@@ -66,6 +66,7 @@ nav:
             - 'RNAseq differential expression in R': 'tutorials/rna_seq_dge_in_r/rna_seq_r.md'
         - 'Singlecell RNAseq':
             - '10X single-cell RNA-seq analysis in R': 'tutorials/singlecell/index.md'
+            - 'scRNA-seq Integration and Differential Expression': 'tutorials/seurat-de/seurat-de.md'
     - 'Proteomics':
         - 'Identifying proteins from mass spectrometry data': 'tutorials/proteomics_basic/proteomics_basic.md'
     - 'Statistics and Visualisation':