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Update process_series for new MONAI deploy version
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RoyWiggins authored Sep 29, 2023
1 parent 60f766e commit 1f735d4
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion process/process_series.py
Original file line number Diff line number Diff line change
Expand Up @@ -146,7 +146,8 @@ def decode_task_json(json_string: Optional[str]) -> Any:
additional_volumes: Dict[str, Dict[str, str]] = decode_task_json(module.additional_volumes)
module_environment = decode_task_json(module.environment)
mercure_environment = dict(MERCURE_IN_DIR=container_in_dir, MERCURE_OUT_DIR=container_out_dir)
monai_environment = dict(MONAI_INPUTPATH=container_in_dir, MONAI_OUTPUTPATH=container_out_dir)
monai_environment = dict(MONAI_INPUTPATH=container_in_dir, MONAI_OUTPUTPATH=container_out_dir,
HOLOSCAN_INPUT_PATH=container_in_dir, HOLOSCAN_OUTPUT_PATH=container_out_dir)

environment = {**module_environment, **mercure_environment, **monai_environment}
arguments = decode_task_json(module.docker_arguments)
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