allow long lines in rst file

metagenlab · Nov 7, 2024 · 014201d · 014201d
1 parent 3bf917c
commit 014201d
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/rules/report_generation/scripts/report_epidemiology.py b/rules/report_generation/scripts/report_epidemiology.py
@@ -32,6 +32,7 @@
 core_genome_bed = snakemake.params["core_genome_bed"]
 
 output_file = snakemake.output[0]
+output_file2 = snakemake.output[1]
 
 '''
 leaf2mlst = pandas.read_csv(snakemake.input["mlst"],
@@ -251,11 +252,14 @@
 
 """
 
+with open(output_file2, "w") as fh:
+    fh.write(report_str)
+
 with open(output_file, "w") as fh:
     publish_file(
         source=io.StringIO(report_str),
         destination=fh,
         writer_name="html",
-        settings_overrides={"stylesheet_path": ""},
+        settings_overrides={"stylesheet_path": "", "line_length_limit": 2000000000},
     )