Set up dependabot configuration for pip

.github/dependabot.yml

@@ -0,0 +1,11 @@
+version: 2
+updates:
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "daily"
+    # Allow up to 2 open pull requests at a time
+    open-pull-requests-limit: 2
+    ignore:
+      # segmentation-models-pytorch requires older timm, can't update
+      - dependency-name: "timm"

.github/workflows/release.yaml

@@ -36,8 +36,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install --pre 'rasterio>=1.0.16'
-        pip install .[datasets,tests]
+        pip install -r requirements.txt
         pip list
     - name: Run integration checks
       run: pytest -m slow
@@ -53,9 +52,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install --pre 'rasterio>=1.0.16'
-        pip install .[datasets,tests]
-        pip install -r docs/requirements.txt
+        pip install -r requirements.txt
         pip list
     - name: Run notebook checks
       env:

.github/workflows/style.yaml

@@ -21,8 +21,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install --pre 'rasterio>=1.0.16'
-        pip install .[style]
+        pip install -r requirements.txt
         pip list
     - name: Run black checks
       run: black . --check --diff
@@ -38,8 +37,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install --pre 'rasterio>=1.0.16'
-        pip install .[style]
+        pip install -r requirements.txt
         pip list
     - name: Run flake8 checks
       run: flake8
@@ -55,8 +53,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install --pre 'rasterio>=1.0.16'
-        pip install .[style]
+        pip install -r requirements.txt
         pip list
     - name: Run isort checks
       run: isort . --check --diff
@@ -72,8 +69,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install --pre 'rasterio>=1.0.16'
-        pip install .[style]
+        pip install -r requirements.txt
         pip list
     - name: Run pydocstyle checks
       run: pydocstyle
@@ -89,8 +85,7 @@ jobs:
         python-version: 3.9
     - name: Install pip dependencies
       run: |
-        pip install --pre 'rasterio>=1.0.16'
-        pip install .[style]
+        pip install -r requirements.txt
         pip list
     - name: Run pyupgrade checks
       run: pyupgrade --py37-plus $(find . -name "*.py")

.github/workflows/tests.yaml

@@ -21,8 +21,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install --pre 'rasterio>=1.0.16'
-        pip install .[datasets,tests]
+        pip install -r requirements.txt
         pip list
     - name: Run mypy checks
       run: mypy .
@@ -57,14 +56,13 @@ jobs:
       if: ${{ runner.os == 'Windows' }}
     - name: Install conda dependencies (Windows)
       run: |
-        conda install 'fiona>=1.5' 'rasterio>=1.0.16'
+        conda install 'fiona==1.8.21' 'rasterio==1.2.10'
         conda list
         conda info
       if: ${{ runner.os == 'Windows' }}
     - name: Install pip dependencies
       run: |
-        pip install --pre 'rasterio>=1.0.16'
-        pip install .[datasets,tests]
+        pip install -r requirements.txt
         pip list
     - name: Run pytest checks
       run: pytest --cov=torchgeo --cov-report=xml

.readthedocs.yaml

@@ -13,6 +13,7 @@ build:
 # Configuration of the Python environment to be used
 python:
    install:
+   - requirements: requirements.txt
    - requirements: docs/requirements.txt
    - method: pip
      path: .

docs/requirements.txt

@@ -1,8 +1 @@
-# ipywidgets 7+ required for nbsphinx
-ipywidgets>=7
-# nbsphinx 0.8.5 fixes bug with nbformat attributes
-nbsphinx>=0.8.5
-# release versions missing files, must install from master
 -e git+https://github.com/pytorch/pytorch_sphinx_theme.git#egg=pytorch_sphinx_theme
-# sphinx 4+ required for autodoc_typehints_description_target = documented
-sphinx>=4

docs/tutorials/benchmarking.ipynb

@@ -96,7 +96,9 @@
    "source": [
     "data_root = tempfile.gettempdir()\n",
     "naip_root = os.path.join(data_root, \"naip\")\n",
-    "naip_url = \"https://naipeuwest.blob.core.windows.net/naip/v002/de/2018/de_060cm_2018/38075/\"\n",
+    "naip_url = (\n",
+    "    \"https://naipeuwest.blob.core.windows.net/naip/v002/de/2018/de_060cm_2018/38075/\"\n",
+    ")\n",
     "tiles = [\n",
     "    \"m_3807511_ne_18_060_20181104.tif\",\n",
     "    \"m_3807511_se_18_060_20181104.tif\",\n",
@@ -211,7 +213,9 @@
     "    naip = NAIP(naip_root, crs=chesapeake.crs, res=chesapeake.res, cache=cache)\n",
     "    dataset = chesapeake & naip\n",
     "    sampler = RandomGeoSampler(naip, size=1000, length=888)\n",
-    "    dataloader = DataLoader(dataset, batch_size=12, sampler=sampler, collate_fn=stack_samples)\n",
+    "    dataloader = DataLoader(\n",
+    "        dataset, batch_size=12, sampler=sampler, collate_fn=stack_samples\n",
+    "    )\n",
     "    duration, count = time_epoch(dataloader)\n",
     "    print(duration, count)"
    ]
@@ -262,7 +266,9 @@
     "    naip = NAIP(naip_root, crs=chesapeake.crs, res=chesapeake.res, cache=cache)\n",
     "    dataset = chesapeake & naip\n",
     "    sampler = GridGeoSampler(naip, size=1000, stride=500)\n",
-    "    dataloader = DataLoader(dataset, batch_size=12, sampler=sampler, collate_fn=stack_samples)\n",
+    "    dataloader = DataLoader(\n",
+    "        dataset, batch_size=12, sampler=sampler, collate_fn=stack_samples\n",
+    "    )\n",
     "    duration, count = time_epoch(dataloader)\n",
     "    print(duration, count)"
    ]

docs/tutorials/custom_raster_dataset.ipynb

@@ -56,7 +56,7 @@
     "from torch import Tensor\n",
     "from torch.utils.data import DataLoader\n",
     "from torchgeo.datasets import RasterDataset, stack_samples\n",
-    "from torchgeo.samplers import RandomGeoSampler\n"
+    "from torchgeo.samplers import RandomGeoSampler"
    ]
   },
   {
@@ -81,8 +81,8 @@
    "source": [
     "from torchgeo.datasets.utils import extract_archive\n",
     "\n",
-    "data_root = Path('../../tests/data/xview3/')\n",
-    "extract_archive(str(data_root / 'sample_data.tar.gz'))"
+    "data_root = Path(\"../../tests/data/xview3/\")\n",
+    "extract_archive(str(data_root / \"sample_data.tar.gz\"))"
    ]
   },
   {
@@ -111,9 +111,9 @@
    "outputs": [],
    "source": [
     "class XView3Polarizations(RasterDataset):\n",
-    "    '''\n",
+    "    \"\"\"\n",
     "    Load xView3 polarization data that ends in *_dB.tif\n",
-    "    '''\n",
+    "    \"\"\"\n",
     "\n",
     "    filename_glob = \"*_dB.tif\""
    ]
@@ -153,10 +153,10 @@
     "dl = DataLoader(ds, sampler=sampler, collate_fn=stack_samples)\n",
     "\n",
     "for sample in dl:\n",
-    "    image = sample['image']\n",
+    "    image = sample[\"image\"]\n",
     "    print(image.shape)\n",
     "    image = torch.squeeze(image)\n",
-    "    plt.imshow(image, cmap='bone', vmin=-35, vmax=-5)"
+    "    plt.imshow(image, cmap=\"bone\", vmin=-35, vmax=-5)"
    ]
   }
  ],

docs/tutorials/getting_started.ipynb

@@ -236,7 +236,9 @@
    "source": [
     "data_root = tempfile.gettempdir()\n",
     "naip_root = os.path.join(data_root, \"naip\")\n",
-    "naip_url = \"https://naipeuwest.blob.core.windows.net/naip/v002/de/2018/de_060cm_2018/38075/\"\n",
+    "naip_url = (\n",
+    "    \"https://naipeuwest.blob.core.windows.net/naip/v002/de/2018/de_060cm_2018/38075/\"\n",
+    ")\n",
     "tiles = [\n",
     "    \"m_3807511_ne_18_060_20181104.tif\",\n",
     "    \"m_3807511_se_18_060_20181104.tif\",\n",