mf6: update dfns and mf6 module (#2399) #3070
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| name: FloPy Modflow6 continuous integration | |
| on: | |
| schedule: | |
| - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST) | |
| push: | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test_mf6: | |
| name: Modflow6 FloPy tests | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout flopy repo | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| cache: 'pip' | |
| cache-dependency-path: pyproject.toml | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install https://github.com/modflowpy/pymake/zipball/master | |
| pip install https://github.com/Deltares/xmipy/zipball/develop | |
| pip install https://github.com/MODFLOW-USGS/modflowapi/zipball/develop | |
| pip install .[test,optional] | |
| pip install meson ninja | |
| - name: Setup GNU Fortran | |
| uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: gcc | |
| version: 13 | |
| - name: Checkout MODFLOW 6 | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/modflow6 | |
| path: modflow6 | |
| - name: Build and install MF6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir --buildtype=debugoptimized --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| meson test --verbose --no-rebuild -C builddir | |
| - name: Update package classes | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Install executables | |
| working-directory: modflow6/autotest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations=0 get_exes.py | |
| - name: Run tests | |
| working-directory: modflow6/autotest | |
| run: pytest -v --cov=flopy --cov-report=xml --cov-append --durations=0 -n auto -m "not repo and not regression" | |
| - name: Print coverage report before upload | |
| working-directory: ./modflow6/autotest | |
| run: coverage report | |
| - name: Upload coverage to Codecov | |
| if: | |
| github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| files: ./modflow6/autotest/coverage.xml | |
| test_mf6_examples: | |
| name: MF6 examples FloPy tests | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout flopy repo | |
| uses: actions/checkout@v4 | |
| - name: Checkout MODFLOW 6 | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/modflow6 | |
| path: modflow6 | |
| - name: Checkout MF6 examples | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/modflow6-examples | |
| path: modflow6-examples | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| cache: 'pip' | |
| cache-dependency-path: pyproject.toml | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install https://github.com/modflowpy/pymake/zipball/master | |
| pip install https://github.com/Deltares/xmipy/zipball/develop | |
| pip install https://github.com/MODFLOW-USGS/modflowapi/zipball/develop | |
| pip install .[test,optional] | |
| pip install meson ninja | |
| pip install -r modflow6-examples/etc/requirements.pip.txt | |
| - name: Setup GNU Fortran | |
| uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: gcc | |
| version: 13 | |
| - name: Install executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Build and install MF6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir --buildtype=debugoptimized --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| meson test --verbose --no-rebuild -C builddir | |
| cp bin/* ~/.local/bin/modflow/ | |
| - name: Update package classes | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Test MF6 examples | |
| working-directory: modflow6-examples/autotest | |
| run: pytest -v -n=auto --durations=0 test_scripts.py |