hotfix(numpy 2.0 deprecation) #1458
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: FloPy continuous integration | |
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| jobs: | |
| build: | |
| name: Build | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.8 | |
| cache: 'pip' | |
| cache-dependency-path: pyproject.toml | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install build twine | |
| pip install . | |
| python -c "import flopy; print(f'{flopy.__version__}')" | |
| - name: Build package | |
| run: python -m build | |
| - name: Check package | |
| run: twine check --strict dist/* | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.8 | |
| cache: 'pip' | |
| cache-dependency-path: pyproject.toml | |
| - name: Install Python dependencies | |
| run: | | |
| pip install . | |
| pip install ".[lint]" | |
| - name: Run isort | |
| run: | | |
| echo "if isort check fails update isort using" | |
| echo " pip install isort --upgrade" | |
| echo "and run" | |
| echo " isort ./flopy" | |
| echo "and then commit the changes." | |
| isort --check --diff ./flopy | |
| - name: Run black | |
| run: | | |
| echo "if black check fails update black using" | |
| echo " pip install black --upgrade" | |
| echo "and run" | |
| echo " black ./flopy" | |
| echo "and then commit the changes." | |
| black --check --diff ./flopy | |
| - name: Run flake8 | |
| run: | | |
| flake8 --count --show-source --exit-zero ./flopy | |
| - name: Run pylint | |
| run: | | |
| pylint --jobs=2 --errors-only --exit-zero ./flopy | |
| - name: Check CITATION.cff | |
| run: | | |
| cffconvert --validate | |
| cffconvert -f apalike | |
| cffconvert -f bibtex | |
| smoke: | |
| name: Smoke test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 10 | |
| env: | |
| PYTHON_VERSION: 3.8 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| cache: 'pip' | |
| cache-dependency-path: pyproject.toml | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install . | |
| pip install ".[test, optional]" | |
| - name: Install Modflow executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Smoke test | |
| working-directory: autotest | |
| run: pytest -v -n=auto --smoke --cov=flopy --cov-report=xml --durations=0 --keep-failed=.failed | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload failed test outputs | |
| uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: failed-smoke-${{ runner.os }}-${{ env.PYTHON_VERSION }} | |
| path: autotest/.failed/** | |
| - name: Upload coverage | |
| if: github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: autotest/coverage.xml | |
| test: | |
| name: Test | |
| needs: smoke | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| python-version: [ 3.8, 3.9, "3.10", "3.11", "3.12" ] | |
| exclude: | |
| # avoid shutil.copytree infinite recursion bug | |
| # https://github.com/python/cpython/pull/17098 | |
| - python-version: '3.8.0' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| timeout-minutes: 45 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: etc/environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| init-shell: >- | |
| bash | |
| powershell | |
| - name: Install FloPy | |
| run: pip install . | |
| - name: Install Modflow-related executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Install Modflow dev build executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: modflow6-nightly-build | |
| - name: Update package classes | |
| run: python -m flopy.mf6.utils.generate_classes --ref develop --no-backup | |
| - name: Run tests | |
| working-directory: autotest | |
| run: | | |
| pytest -v -m="not example and not regression" -n=auto --cov=flopy --cov-append --cov-report=xml --durations=0 --keep-failed=.failed --dist loadfile | |
| coverage report | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload failed test outputs | |
| uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: failed-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: autotest/.failed/** | |
| - name: Upload coverage | |
| if: github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: autotest/coverage.xml |