BUG: groupby and apply function produced unexpected column name `reduced` #6632

SiRumCz · 2023-10-05T04:39:47Z

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Reproducible Example

import modin.pandas as pd
import numpy as np

df = pd.DataFrame(np.random.rand(5, 10), index=[f's{i+1}' for i in range(5)]).round(2)
df['group'] = [1,1,2,2,3]

res = df.groupby('group', group_keys=True).apply(lambda x: x.name+2)
res_dict = res.to_dict()

Issue Description

in the example, vanilla panda will return res as a Series, but modin returns a DataFrame with column name __reduced__, this will alter the data of my res_dict.

>>> res
       __reduced__
group
1                3
2                4
3                5

>>> res_dict
{'__reduced__': {1: 3, 2: 4, 3: 5}}

Expected Behavior

>>> res
group
1    3
2    4
3    5
dtype: int64
>>> res_dict
{1: 3, 2: 4, 3: 5}

Error Logs

Replace this line with the error backtrace (if applicable).

Installed Versions

INSTALLED VERSIONS

commit : b5545c6
python : 3.8.10.final.0
python-bits : 64
OS : Linux
OS-release : 5.10.16.3-microsoft-standard-WSL2
Version : #1 SMP Fri Apr 2 22:23:49 UTC 2021
machine : x86_64
processor : x86_64
byteorder : little
LC_ALL : None
LANG : C.UTF-8
LOCALE : en_US.UTF-8

Modin dependencies

modin : 0.23.1
ray : 2.7.0
dask : 2023.5.0
distributed : 2023.5.0
hdk : None

pandas dependencies

pandas : 2.0.3
numpy : 1.24.4
pytz : 2023.3.post1
dateutil : 2.8.2
setuptools : 56.0.0
pip : 23.2.1
Cython : None
pytest : 7.4.2
hypothesis : None
sphinx : None
blosc : None
feather : None
xlsxwriter : None
lxml.etree : None
html5lib : 1.1
pymysql : None
psycopg2 : None
jinja2 : 3.1.2
IPython : None
pandas_datareader: None
bs4 : 4.12.2
bottleneck : None
brotli : None
fastparquet : None
fsspec : 2023.9.2
gcsfs : None
matplotlib : 3.7.3
numba : None
numexpr : None
odfpy : None
openpyxl : None
pandas_gbq : None
pyarrow : 13.0.0
pyreadstat : None
pyxlsb : None
s3fs : None
scipy : 1.10.1
snappy : None
sqlalchemy : None
tables : None
tabulate : None
xarray : None
xlrd : None
zstandard : None
tzdata : 2023.3
qtpy : None
pyqt5 : None

The text was updated successfully, but these errors were encountered:

Garra1980 · 2023-10-05T22:12:04Z

Confirmed. Somewhat similar to #3219

SiRumCz · 2023-10-06T14:45:09Z

@Garra1980 This function seems to be unstable.

Below code will give me AssertionError

import modin.pandas as pd
import numpy as np

df = pd.DataFrame(np.random.rand(1246, 49), index=[f's{i+1}' for i in range(1246)]).round(2)
df['_cluster'] = np.random.randint(low=1, high=15, size=1246)

res = df.groupby('_cluster', group_keys=True).apply(lambda x: len(x.values))
res_dict = res.to_dict()

if I simply print res, it will give me:

>>> res
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "venv/lib/python3.8/site-packages/modin/logging/logger_decorator.py", line 128, in run_and_log
    return obj(*args, **kwargs)
  File "venv/lib/python3.8/site-packages/modin/pandas/dataframe.py", line 250, in __repr__
    result = repr(self._build_repr_df(num_rows, num_cols))
  File "venv/lib/python3.8/site-packages/modin/logging/logger_decorator.py", line 128, in run_and_log
    return obj(*args, **kwargs)
  File "venv/lib/python3.8/site-packages/modin/pandas/base.py", line 258, in _build_repr_df
    return self.iloc[indexer]._query_compiler.to_pandas()
  File "venv/lib/python3.8/site-packages/modin/logging/logger_decorator.py", line 128, in run_and_log
    return obj(*args, **kwargs)
  File "venv/lib/python3.8/site-packages/modin/core/storage_formats/pandas/query_compiler.py", line 280, in to_pandas
    return self._modin_frame.to_pandas()
  File "venv/lib/python3.8/site-packages/modin/logging/logger_decorator.py", line 128, in run_and_log
    return obj(*args, **kwargs)
  File "venv/lib/python3.8/site-packages/modin/core/dataframe/pandas/dataframe/utils.py", line 376, in run_f_on_minimally_updated_metadata
    result = f(self, *args, **kwargs)
  File "venv/lib/python3.8/site-packages/modin/core/dataframe/pandas/dataframe/dataframe.py", line 3740, in to_pandas
    ErrorMessage.catch_bugs_and_request_email(
  File "venv/lib/python3.8/site-packages/modin/error_message.py", line 80, in catch_bugs_and_request_email
    raise Exception(
Exception: Internal Error. Please visit https://github.com/modin-project/modin/issues to file an issue with the traceback and the command that caused this error. If you can't file a GitHub issue, please email bug_reports@modin.org.
Internal and external indices on axis 1 do not match.

Noted I have MODIN_EXPERIMENTAL_GROUPBY=True.

Further inspection shows that the columns of my res after groupby+apply are inconsistent, my first example with 5x10 data, the res is correct and res.columns is Index(['__reduced__'], dtype='object'), but my second example with 1200 x 50 data, the res will give me AssertionError or Exception: Internal Error: Internal and external indices on axis 1 do not match. and res.columns is:

Index([         0,          1,          2,          3,          4,          5,
                6,          7,          8,          9,         10,         11,
               12,         13,         14,         15,         16,         17,
               18,         19,         20,         21,         22,         23,
               24,         25,         26,         27,         28,         29,
               30,         31,         32,         33,         34,         35,
               36,         37,         38,         39,         40,         41,
               42,         43,         44,         45,         46,         47,
               48, '_cluster'],
      dtype='object')

I am not an expert in Modin, but my guess is that when data is large enough to trigger some Modin mechanisms, the returning result is not synced properly across the workers.

Garra1980 · 2023-10-06T15:53:38Z

Hmmm works for me but I'm with python 3.9
test.py:

import numpy as np

df = pd.DataFrame(np.random.rand(1246, 49), index=[f's{i+1}' for i in range(1246)]).round(2)
df['_cluster'] = np.random.randint(low=1, high=15, size=1246)

res = df.groupby('_cluster', group_keys=True).apply(lambda x: len(x.values))
print(res)

command
MODIN_ENGINE=ray MODIN_EXPERIMENTAL_GROUPBY=True python test.py

SiRumCz · 2023-10-06T15:56:52Z

@Garra1980 interesting, are you also testing on distributed ray by any chance?

This is my pd.show_versions():

commit           : b5545c686751f4eed6913f1785f9c68f41f4e51d
python           : 3.8.10.final.0
python-bits      : 64
OS               : Linux
OS-release       : 5.15.0-84-generic
Version          : #93~20.04.1-Ubuntu SMP Wed Sep 6 16:15:40 UTC 2023
machine          : x86_64
processor        : x86_64
byteorder        : little
LC_ALL           : None
LANG             : en_US.UTF-8
LOCALE           : en_US.UTF-8

Modin dependencies
------------------
modin            : 0.23.1
ray              : 2.7.0
dask             : 2023.5.0
distributed      : 2023.5.0
hdk              : None

pandas dependencies
-------------------
pandas           : 2.0.3
numpy            : 1.24.4
pytz             : 2023.3.post1
dateutil         : 2.8.2
setuptools       : 56.0.0
pip              : 23.2.1
Cython           : None
pytest           : 7.4.2
hypothesis       : None
sphinx           : None
blosc            : None
feather          : None
xlsxwriter       : None
lxml.etree       : None
html5lib         : 1.1
pymysql          : None
psycopg2         : None
jinja2           : 3.1.2
IPython          : None
pandas_datareader: None
bs4              : 4.12.2
bottleneck       : None
brotli           : None
fastparquet      : None
fsspec           : 2023.9.2
gcsfs            : None
matplotlib       : 3.7.3
numba            : None
numexpr          : None
odfpy            : None
openpyxl         : None
pandas_gbq       : None
pyarrow          : 13.0.0
pyreadstat       : None
pyxlsb           : None
s3fs             : None
scipy            : 1.10.1
snappy           : None
sqlalchemy       : None
tables           : None
tabulate         : None
xarray           : None
xlrd             : None
zstandard        : None
tzdata           : 2023.3
qtpy             : None
pyqt5            : None

SiRumCz · 2023-10-06T16:06:08Z

@Garra1980 I just tested on py3.10 and still getting the same error.

MODIN_ENGINE=ray MODIN_EXPERIMENTAL_GROUPBY=True MODIN_RAY_CLUSTER=True python test.py

...
310_venv/lib/python3.10/site-packages/modin/error_message.py", line 80, in catch_bugs_and_request_email
    raise Exception(
Exception: Internal Error. Please visit https://github.com/modin-project/modin/issues to file an issue with the traceback and the command that caused this error. If you can't file a GitHub issue, please email bug_reports@modin.org.
Internal and external indices on axis 1 do not match.

If you are using a newer version of Modin, then I guess this is fixed from one of the PRs, but unfortunately I need to support python 3.8 for some old environments. By the way, is there a specific reason to require python 3.9 for Modin 0.24.0?

Garra1980 · 2023-10-06T16:33:40Z

I see, the problem indeed can be visible in cluster mode since I checked locally

0.24 reflects pandas python support matrix, they stopped supporting 3.8 since 2.1 as far as I recall

SiRumCz · 2023-10-06T19:56:58Z

@Garra1980 any reason to why this would happen? Weirdly, before this code, there are a few other places that also uses groupby+apply, but they all work. I tried to call the same code 10 times and here's the result:

>>> for i in range(10):
...     df.groupby(axis=0, by='_cluster').apply(lambda x: len(x.values)).shape
...
(14, 1)
(14, 1)
(14, 50)
(14, 50)
(14, 50)
(14, 50)
(14, 50)
(14, 50)
(14, 50)
(14, 50)

Sometimes it returns correct result.

anmyachev · 2023-10-09T14:52:49Z

@Garra1980 any reason to why this would happen? Weirdly, before this code, there are a few other places that also uses groupby+apply, but they all work. I tried to call the same code 10 times and here's the result:
>>> for i in range(10):
...     df.groupby(axis=0, by='_cluster').apply(lambda x: len(x.values)).shape
...
(14, 1)
(14, 1)
(14, 50)
(14, 50)
(14, 50)
(14, 50)
(14, 50)
(14, 50)
(14, 50)
(14, 50)
Sometimes it returns correct result.

@SiRumCz this error occurs due to the fact that in some cases an empty dataframe appears in internal partitions that was processed incorrectly. And the reason that it does not always occur is that df.sample is used inside, which produces a random result. However it seems to be fixed in 0.24.*.

@dchigarev @Garra1980 what do you think about moving the groupby fixes to the 0.23 branch since 0.23 is the last minor release that supports python 3.8?

…se of experimental groupby (#6649) Signed-off-by: izamyati <igor.zamyatin@intel.com> Co-authored-by: Dmitry Chigarev <dmitry.chigarev@intel.com>

…y.apply in case of experimental groupby (modin-project#6649) Signed-off-by: izamyati <igor.zamyatin@intel.com> Co-authored-by: Dmitry Chigarev <dmitry.chigarev@intel.com>

anmyachev · 2023-11-15T19:59:22Z

Hello @SiRumCz! We have released Modin 0.23.1post0 with a fix for the issue (and some other fixes). You might be interested.

SiRumCz added bug 🦗 Something isn't working Triage 🩹 Issues that need triage labels Oct 5, 2023

anmyachev added External Pull requests and issues from people who do not regularly contribute to modin and removed Triage 🩹 Issues that need triage labels Oct 9, 2023

Garra1980 mentioned this issue Oct 14, 2023

FIX-#6632: Return Series instead of Dataframe for groupby.apply in case of experimental groupby #6649

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anmyachev closed this as completed in #6649 Oct 21, 2023

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BUG: groupby and apply function produced unexpected column name `reduced` #6632

BUG: groupby and apply function produced unexpected column name `reduced` #6632

SiRumCz commented Oct 5, 2023 •

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INSTALLED VERSIONS

Modin dependencies

pandas dependencies

Garra1980 commented Oct 5, 2023

SiRumCz commented Oct 6, 2023 •

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Garra1980 commented Oct 6, 2023

SiRumCz commented Oct 6, 2023 •

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Garra1980 commented Oct 6, 2023

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anmyachev commented Oct 9, 2023

anmyachev commented Nov 15, 2023

BUG: groupby and apply function produced unexpected column name __reduced__ #6632

BUG: groupby and apply function produced unexpected column name __reduced__ #6632

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SiRumCz commented Oct 5, 2023 • edited Loading

Modin version checks

Reproducible Example

Issue Description

Expected Behavior

Error Logs

Installed Versions

INSTALLED VERSIONS

Modin dependencies

pandas dependencies

Garra1980 commented Oct 5, 2023

SiRumCz commented Oct 6, 2023 • edited Loading

Garra1980 commented Oct 6, 2023

SiRumCz commented Oct 6, 2023 • edited Loading

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Garra1980 commented Oct 6, 2023

SiRumCz commented Oct 6, 2023 • edited Loading

anmyachev commented Oct 9, 2023

anmyachev commented Nov 15, 2023

BUG: groupby and apply function produced unexpected column name `reduced` #6632

BUG: groupby and apply function produced unexpected column name `reduced` #6632

SiRumCz commented Oct 5, 2023 •

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