MONDO:omim_formerly
#8235
Open
MONDO:omim_formerly
#8235
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
- Update: f-endities.md with an entry for MONDO:omim_formerly
joeflack4
requested review from
sabrinatoro,
twhetzel and
nicolevasilevsky
as code owners
twhetzel
reviewed
Oct 18, 2024
docs/editors-guide/f-entities.md
Outdated
| @@ -193,6 +193,7 @@ MONDO:entailed | An inferred superclass (which is a redundant axiom) | subc | |||
| MONDO:equivalentObsolete | Used for cases where we have exact 1:1 matches between a live class in Mondo and an obsolete class in the source ontology. We want to avoid making an equivalence axiom (MONDO:equivalentTo) here. | xrefs | N | MONDO:0020499 'Nipah virus disease' database_cross_reference: Orphanet:1239 (was obsoleted in Orphanet) {source=MONDO:equivalentObsolete} | |||
| MONDO:equivalentTo | This is interpreted strongly as an OWL equivalence axiom, meaning the two terms are considered to be exactly the same. This can be added to any xref where this is true. | xrefs | N | MONDO:0100087 'familial Alzheimer disease' database_cross_reference: GARD:0000632 (refers to the disease in GARD) {source=MONDO:equivalentTo} | |||
| MONDO:includedEntryInOMIM | This indicates a term is an 'included' entry in OMIM, for example https://omim.org/entry/233910 | xrefs | N | MONDO:0100167 'dystonia, dopa-responsive, with or without hyperphenylalaninemia, autosomal recessive' | |||
| MONDO:omim_formerly | Used on OMIM synonyms whose labels end with ", formerly", denoting a status similar to `owl:deprecated`. | synonyms | N | | |||
There was a problem hiding this comment.
I am not sure this is the correct description, e.g. "status similar to owl:deprecated". An example could be an OMIM that contains ", formerly".
There was a problem hiding this comment.
- @joeflack4 An example could be an OMIM that contains ", formerly".
- Done!
- @twhetzel / curators: Confirm/review notes on curator description of "formerly".
twhetzel
reviewed
Oct 18, 2024
- Update: Added example to entry in f-entities.md
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This is related to new synonym annotations coming from:
This is an update to the Axiom Annotations Summary Table.
I'm not sure what to add in the "examples" column. Perhaps I could simply add a link to an OMIM term, and one of the labels? E.g.:
Changes
MONDO:omim_formerly