Skip to content

Commit

Permalink
HGNC ROBOT template
Browse files Browse the repository at this point in the history
- Rename: mondo_genes.csv --> mondo_genes.robot.tsv
  • Loading branch information
joeflack4 committed Jun 6, 2024
1 parent 8299957 commit 23c3d59
Show file tree
Hide file tree
Showing 3 changed files with 4 additions and 4 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/buid_and_release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -40,4 +40,4 @@ jobs:
files: |
omim.owl
omim.sssom.tsv
mondo_genes.csv
mondo_genes.robot.tsv
2 changes: 1 addition & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -34,4 +34,4 @@ omim.json
mondo_exactmatch_omim.sssom.tsv
mondo_exactmatch_omimps.sssom.tsv
omim.owl
mondo_genes.csv
mondo_genes.robot.tsv
4 changes: 2 additions & 2 deletions makefile
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@


# MAIN COMMANDS / GOALS ------------------------------------------------------------------------------------------------
all: omim.ttl omim.sssom.tsv omim.owl mondo_genes.csv
all: omim.ttl omim.sssom.tsv omim.owl mondo_genes.robot.tsv

# build: Create new omim.ttl
omim.ttl:
Expand Down Expand Up @@ -35,7 +35,7 @@ omim.owl: omim.ttl mondo_exactmatch_omim.sssom.owl mondo_exactmatch_omimps.sssom
query --update sparql/hgnc_links.ru \
convert -f ofn -o $@

mondo_genes.csv: omim.owl
mondo_genes.robot.tsv: omim.owl
robot query -i omim.owl --query sparql/mondo_genes.sparql $@

cleanup:
Expand Down

0 comments on commit 23c3d59

Please sign in to comment.