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- New omim.ttl - Also now generating omim.sssom.tsv for release makefile - Added SSSOM command Requirements - Added sssom to Pipfile data/ - Updated HGNC mapping file to a better one. - Removed some TSV variations on canonical OMIM files Ingest updates - Now creates TSVs in data/ cache - Now downloads genemap2.txt - oboInOwl:hasDbXref --> skosExactMatch - Did for UMLS - Did for Orphanet - Did in one other location - Updated curie_map .gitignore - Added some new files
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@@ -13,6 +13,7 @@ pandas = "*" | |
pyyaml = "*" | ||
requests = "*" | ||
python-dotenv = "*" | ||
sssom = "*" | ||
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[requires] | ||
python_version = "3.8" |
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@@ -0,0 +1,9 @@ | ||
mapping_set_id: http://example.org | ||
license: http://w3id.org/sssom/license/unspecified | ||
creator_id: https://orcid.org/0000-0002-2906-7319 | ||
curie_map: | ||
HGNC: "https://identifiers.org/hgnc:" | ||
HGNC_symbol: https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/ | ||
OMIM: https://omim.org/entry/ | ||
UMLS: http://linkedlifedata.com/resource/umls/id/ | ||
ORPHA: http://www.orpha.net/ORDO/Orphanet_ |
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