embellishment of docstring

monarch-initiative · Jun 20, 2024 · a0bd2ee · a0bd2ee
1 parent 572bbe1
commit a0bd2ee
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/src/malco/post_process/compute_mrr.py b/src/malco/post_process/compute_mrr.py
@@ -6,7 +6,7 @@
 from malco.post_process.mondo_score_utils import score_grounded_result
 from malco.post_process.mondo_score_utils import omim_mappings
 from typing import List
-from oaklib.interfaces import OboGraphInterface, MappingProviderInterface
+from oaklib.interfaces import OboGraphInterface
 
 
 from oaklib import get_adapter

diff --git a/src/malco/post_process/mondo_score_utils.py b/src/malco/post_process/mondo_score_utils.py
@@ -1,6 +1,5 @@
 from oaklib.datamodels.vocabulary import IS_A
-from oaklib.interfaces import MappingProviderInterface, OboGraphInterface
-from oaklib import get_adapter
+from oaklib.interfaces import MappingProviderInterface
 
 from typing import List 
 from cachetools import cached, LRUCache
@@ -18,6 +17,7 @@ def omim_mappings(term: str, adapter) -> List[str]:
 
     Example:
 
+    >>> from oaklib import get_adapter
     >>> omim_mappings("MONDO:0007566", get_adapter("sqlite:obo:mondo"))
     ['OMIM:132800']
 
@@ -41,7 +41,7 @@ def score_grounded_result(prediction: str, ground_truth: str, mondo) -> float:
     Score the grounded result.
 
     Exact match:
-
+    >>> from oaklib import get_adapter
     >>> score_grounded_result("OMIM:132800", "OMIM:132800", get_adapter("sqlite:obo:mondo"))
     1.0