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@moncla-lab

Moncla Lab

Viral emergence, transmission, and evolution lab at U Penn

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  1. avian-flu-USDA-cattle avian-flu-USDA-cattle Public

    repository for curation and analysis of USDA cattle data

    5

  2. h5nx-Clades h5nx-Clades Public

    Python 3 2

  3. h5n1-mutations-rotation h5n1-mutations-rotation Public

    Python

  4. h5-sequencing-protocol-dev h5-sequencing-protocol-dev Public

    Repo for developing and testing protocols of H5 influenza sequencing in North America

    Jupyter Notebook

  5. non-human-h3nx-influenza non-human-h3nx-influenza Public

    Jupyter Notebook

  6. WI-SARS-CoV-2-Phylodynamics WI-SARS-CoV-2-Phylodynamics Public

    Repository for all files and relevant data for analyses of SARS-COV-2 in the state of Wisconsin

    Jupyter Notebook 1

Repositories

Showing 10 of 16 repositories
  • illumina-pipeline Public

    Bioinformatics pipeline for Illumina viral deep sequencing

    moncla-lab/illumina-pipeline’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Dec 4, 2024
  • h5-nextclade Public

    Files and scripts for H5 Nextclade manuscript

    moncla-lab/h5-nextclade’s past year of commit activity
    Python 0 0 0 0 Updated Nov 15, 2024
  • WI-SARS-CoV-2-Phylodynamics Public

    Repository for all files and relevant data for analyses of SARS-COV-2 in the state of Wisconsin

    moncla-lab/WI-SARS-CoV-2-Phylodynamics’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Nov 11, 2024
  • GenoFLU-multi Public Forked from USDA-VS/GenoFLU

    Influenza data pipeline to automate genotyping assignment

    moncla-lab/GenoFLU-multi’s past year of commit activity
    Python 0 GPL-3.0 4 0 0 Updated Nov 3, 2024
  • HMPV-Pittsburgh Public

    This repo contains XMLs and visualization scripts for the analysis of HMPV from Pittsburgh

    moncla-lab/HMPV-Pittsburgh’s past year of commit activity
    R 0 0 0 0 Updated Sep 25, 2024
  • h3nx-evo Public
    moncla-lab/h3nx-evo’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 25, 2024
  • annotate-dms Public

    Script to annotate Nextstrain tree with phenotype values from DMS studies

    moncla-lab/annotate-dms’s past year of commit activity
    Python 0 0 0 0 Updated Jul 10, 2024
  • h5-sequencing-protocol-dev Public

    Repo for developing and testing protocols of H5 influenza sequencing in North America

    moncla-lab/h5-sequencing-protocol-dev’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 3, 2024
  • nextstrain-hpai-north-america Public

    scripts and config files for nextstrain builds for HPAI in north america

    moncla-lab/nextstrain-hpai-north-america’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 16, 2024
  • h5nx-Clades Public
    moncla-lab/h5nx-Clades’s past year of commit activity
    Python 3 2 0 0 Updated May 8, 2024
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