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Add support for mzMLs on Panorama #21

Merged
merged 3 commits into from
Sep 20, 2024
Merged

Add support for mzMLs on Panorama #21

merged 3 commits into from
Sep 20, 2024

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ajmaurais
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  • Rewrite get_mzmls sub-workflow to handle mzML files stored on Panorama
  • All MS data files must have the same extension, but MS files can be retrieved from more than one directory.
  • Add panorama.domain parameter to check for Panoramaness.

@ajmaurais
Use params.panorama.domain to test for Panoramaness.
c4c56dc
@ajmaurais
Overhaul get_mzmls subworkflow.
2cdfa3c 
- Add support for mzML files stored on panorama.
- Use list_params function to process spectra_dir parameter.
@ajmaurais
Rename procecies and variables.
bcf5c54 
- Rename all panorama procecies with text GET_RAW -> GET_MS
- Rename output parameter of PANORAMA_GET_MS_FILE_LIST
  raw_files -> ms_files
@mriffle mriffle merged commit 5f7ed38 into mriffle:main Sep 20, 2024
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@ajmaurais ajmaurais deleted the panorama_mzml branch September 20, 2024 20:40
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@ajmaurais @mriffle