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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 371 216

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 138 65

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 60 30

Repositories

Showing 10 of 224 repositories
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 5 97 (2 issues need help) 19 Updated Sep 30, 2024
  • smile-dashboard Public
    mskcc/smile-dashboard’s past year of commit activity
    TypeScript 0 AGPL-3.0 8 0 3 Updated Sep 30, 2024
  • ridgeback Public

    Toil API

    mskcc/ridgeback’s past year of commit activity
    Python 1 2 38 5 Updated Sep 30, 2024
  • igo-demux Public

    Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

    mskcc/igo-demux’s past year of commit activity
    Python 6 Apache-2.0 0 4 0 Updated Sep 30, 2024
  • LimsRest Public

    the restful service used by the IGO LIMS

    mskcc/LimsRest’s past year of commit activity
    Java 2 2 5 4 Updated Sep 30, 2024
  • process_fastq Public

    This package will help process, merge and link fastq in user specified directory from manifest file

    mskcc/process_fastq’s past year of commit activity
    Python 0 0 0 16 Updated Sep 27, 2024
  • Penguin Public

    ecDNA detection pipeline for MSK Sequencing Data

    mskcc/Penguin’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 27, 2024
  • odin Public

    Module for variant calling and maf processing

    mskcc/odin’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Sep 27, 2024
  • AGFusion Public Forked from murphycj/AGFusion

    Python package to annotate and visualize gene fusions.

    mskcc/AGFusion’s past year of commit activity
    Python 0 MIT 25 0 1 Updated Sep 27, 2024
  • fp-docker Public

    Facets Preview Docker implementation for local use.

    mskcc/fp-docker’s past year of commit activity
    R 0 0 0 0 Updated Sep 27, 2024
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