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@multicom-toolbox

MULTICOM Toolbox

The protein structure and function tools developed in Prof. Cheng's Bioinformatics, Data Mining and Machine Learning Lab at University of Missouri - Columbia

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  1. Chromosome3D Chromosome3D Public

    Reconstructing Three-Dimensional Chromosomal Structures from Hi- C Interaction Frequency Data using Distance Geometry Simulated Annealing

    Perl 6 3

  2. CONFOLD CONFOLD Public

    Contact-based protein structure prediction

    Perl 10 4

  3. UniCon3D UniCon3D Public

    UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling. The tool was developed in Bioinformatics, Data Mining and Machine Lea…

    C++ 4 6

Repositories

Showing 10 of 19 repositories
  • DNSS2 Public

    Deep learning architectures for protein secondary structure prediction (version 2)

    multicom-toolbox/DNSS2’s past year of commit activity
    Perl 10 9 1 2 Updated Mar 24, 2023
  • deepdist Public

    Deep learning prediction of protein residue-residue distances

    multicom-toolbox/deepdist’s past year of commit activity
    Python 23 GPL-3.0 4 0 0 Updated Jun 28, 2022
  • multicom Public

    The MULTICOM protein structure system. This repository includes the source code and documents of both template-based and template-free modeling of the MULTICOM protein structure prediction system. 1D feature prediction, contact prediction, and clustering-based model ranking programs are also included.

    multicom-toolbox/multicom’s past year of commit activity
    Perl 17 9 0 0 Updated Nov 2, 2021
  • ConEVA Public

    Toolbox for Assessment of Protein Contacts

    multicom-toolbox/ConEVA’s past year of commit activity
    DIGITAL Command Language 2 GPL-2.0 2 0 0 Updated Jan 5, 2020
  • CNNQA Public

    Deep convolutional neural networks for protein model quality assessment

    multicom-toolbox/CNNQA’s past year of commit activity
    Perl 1 1 0 0 Updated Oct 29, 2019
  • DeepCovQA Public

    Deep convolutional neural networks for protein model quality assessment

    multicom-toolbox/DeepCovQA’s past year of commit activity
    Perl 4 5 0 0 Updated Oct 29, 2019
  • EMAP Public

    The system of estimating model accuracy for protein structures

    multicom-toolbox/EMAP’s past year of commit activity
    Perl 2 1 0 0 Updated Aug 28, 2019
  • DNCON2 Public

    Deep convolutional neural networks for protein contact map prediction

    multicom-toolbox/DNCON2’s past year of commit activity
    Perl 23 GPL-3.0 11 3 0 Updated Aug 5, 2019
  • profun Public

    Profun - protein function prediction tool (one of the top methods in CAFA2 competition)

    multicom-toolbox/profun’s past year of commit activity
    Perl 1 1 0 0 Updated May 13, 2019
  • pdcn Public

    protein function prediction using protein domain co-occurrence network (pdcn - ranked as one of the best methods in CAFA1 competition

    multicom-toolbox/pdcn’s past year of commit activity
    Perl 1 1 0 0 Updated May 13, 2019
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