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Make sure getGeneLocation uses standard strategy to select mapping #437

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merged 2 commits into from
Oct 18, 2017

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@mkroon1 mkroon1 commented Oct 18, 2017

When multiple mappings available, getGeneLocation now orders by chromosome name before returning the first mapping, as is standard for code based on Convertor._get_mapping().

…rsion

New test case where a gene has mappings to both chromosome X and Y, and
the test verifies that the same mapping is selected in API calls to
both getGeneLocation and numberConversion.
When multiple mappings available, getGeneLocation now orders by
chromosome name before returning the first mapping, as is standard
for code based on Convertor._get_mapping().
@mihailefter mihailefter merged commit 6557665 into master Oct 18, 2017
@mkroon1 mkroon1 deleted the fix/genelocation-ambiguous branch October 19, 2017 09:00
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2 participants