Short Sequence Repeat (SSR) Extractor

Automatic short sequence repeat extraction based on run length encoding with variable run lengths.

Usage

python ssr-extractor file [min_count] [min_length] [start] [end]

• file; The file containing the string.
• min_length; Optional. Minimum length of the repeat (default 1).
• min_count; Optional. Minimum number of repeats (default 1).
• start; Optional. A start position in the string.
• end; Optional. A end position in the string.