Make sure extra requirements get installed during readthedocs build #438
Workflow file for this run
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| name: Regression Tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| chemical-interactions-unittests: | |
| runs-on: ubuntu-latest | |
| env: | |
| IMAGE_URI: public.ecr.aws/h7r1e4h2/chemical-interactions:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1-node16 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-east-1 | |
| - name: Login to Amazon ECR Public | |
| id: login-ecr-public | |
| uses: aws-actions/amazon-ecr-login@v1 | |
| with: | |
| registry-type: public | |
| - name: Pull Latest chemical-interactions image | |
| run: | | |
| docker pull ${{ env.IMAGE_URI }} | |
| - name: Run chemical-interactions tests with newest lib | |
| run: | | |
| docker run --rm \ | |
| -v $(pwd)/nanome:/opt/conda/lib/python3.9/site-packages/nanome \ | |
| ${{ env.IMAGE_URI }} \ | |
| python run_tests.py | |
| docking-smina-unittests: | |
| runs-on: ubuntu-latest | |
| env: | |
| IMAGE_URI: public.ecr.aws/h7r1e4h2/docking-smina:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1-node16 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-east-1 | |
| - name: Login to Amazon ECR Public | |
| id: login-ecr-public | |
| uses: aws-actions/amazon-ecr-login@v1 | |
| with: | |
| registry-type: public | |
| - name: Pull Latest docking-smina image | |
| run: | | |
| docker pull ${{ env.IMAGE_URI }} | |
| - name: Run docking-smina tests with newest lib | |
| run: | | |
| docker run --rm \ | |
| -v $(pwd)/nanome:/opt/conda/lib/python3.9/site-packages/nanome \ | |
| ${{ env.IMAGE_URI }} \ | |
| python -m unittest discover tests.smina | |
| antibodies-unittests: | |
| runs-on: ubuntu-latest | |
| env: | |
| IMAGE_URI: public.ecr.aws/h7r1e4h2/antibodies:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1-node16 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-east-1 | |
| - name: Login to Amazon ECR Public | |
| id: login-ecr-public | |
| uses: aws-actions/amazon-ecr-login@v1 | |
| with: | |
| registry-type: public | |
| - name: Pull Latest image | |
| run: | | |
| docker pull ${{ env.IMAGE_URI }} | |
| - name: Run antibodies tests with newest lib | |
| run: | | |
| docker run --rm \ | |
| -v $(pwd)/nanome:/opt/conda/lib/python3.10/site-packages/nanome \ | |
| ${{ env.IMAGE_URI }} \ | |
| python -m unittest discover tests | |
| esp-unittests: | |
| runs-on: ubuntu-latest | |
| env: | |
| IMAGE_URI: public.ecr.aws/h7r1e4h2/esp:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1-node16 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-east-1 | |
| - name: Login to Amazon ECR Public | |
| id: login-ecr-public | |
| uses: aws-actions/amazon-ecr-login@v1 | |
| with: | |
| registry-type: public | |
| - name: Pull Latest image | |
| run: | | |
| docker pull ${{ env.IMAGE_URI }} | |
| - name: Run tests with newest lib | |
| run: | | |
| docker run --rm \ | |
| -v $(pwd)/nanome:/opt/conda/lib/python3.9/site-packages/nanome \ | |
| ${{ env.IMAGE_URI }} \ | |
| python -m unittest discover tests | |
| structure-prep-unittests: | |
| runs-on: ubuntu-latest | |
| env: | |
| IMAGE_URI: public.ecr.aws/h7r1e4h2/structure-prep:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1-node16 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-east-1 | |
| - name: Login to Amazon ECR Public | |
| id: login-ecr-public | |
| uses: aws-actions/amazon-ecr-login@v1 | |
| with: | |
| registry-type: public | |
| - name: Pull Latest image | |
| run: | | |
| docker pull ${{ env.IMAGE_URI }} | |
| - name: Run tests with newest lib | |
| run: | | |
| docker run --rm \ | |
| -v $(pwd)/nanome:/opt/conda/lib/python3.9/site-packages/nanome \ | |
| ${{ env.IMAGE_URI }} \ | |
| python -m unittest discover tests | |
| superimpose-proteins-unittests: | |
| runs-on: ubuntu-latest | |
| env: | |
| IMAGE_URI: public.ecr.aws/h7r1e4h2/superimpose-proteins:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1-node16 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-east-1 | |
| - name: Login to Amazon ECR Public | |
| id: login-ecr-public | |
| uses: aws-actions/amazon-ecr-login@v1 | |
| with: | |
| registry-type: public | |
| - name: Pull Latest image | |
| run: | | |
| docker pull ${{ env.IMAGE_URI }} | |
| - name: Run tests with newest lib | |
| run: | | |
| docker run --rm \ | |
| -v $(pwd)/nanome:/usr/local/lib/python3.8/site-packages/nanome \ | |
| ${{ env.IMAGE_URI }} \ | |
| python -m unittest discover tests | |
| cryo-em-unittests: | |
| runs-on: ubuntu-latest | |
| env: | |
| IMAGE_URI: public.ecr.aws/h7r1e4h2/cryoem:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1-node16 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-east-1 | |
| - name: Login to Amazon ECR Public | |
| id: login-ecr-public | |
| uses: aws-actions/amazon-ecr-login@v1 | |
| with: | |
| registry-type: public | |
| - name: Pull Latest image | |
| run: | | |
| docker pull ${{ env.IMAGE_URI }} | |
| - name: Run tests with newest lib | |
| run: | | |
| docker run --rm \ | |
| -v $(pwd)/nanome:/opt/conda/lib/python3.9/site-packages/nanome \ | |
| ${{ env.IMAGE_URI }} \ | |
| python -m unittest discover tests |