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@nanoporetech

Oxford Nanopore Technologies

Nanopores for single molecule (DNA/RNA, protein) analysis using the MinION, GridION and PromethION systems

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  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 531 63

  2. remora remora Public

    Methylation/modified base calling separated from basecalling.

    Python 157 20

  3. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 420 74

  4. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 139 18

  5. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 178 27

  6. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 395 121

Repositories

Showing 10 of 90 repositories
  • dorado Public

    Oxford Nanopore's Basecaller

    nanoporetech/dorado’s past year of commit activity
    C++ 531 63 107 (2 issues need help) 2 Updated Nov 13, 2024
  • dorado-docs Public

    Dorado Documentation

    nanoporetech/dorado-docs’s past year of commit activity
    Python 1 0 0 0 Updated Nov 13, 2024
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    nanoporetech/pod5-file-format’s past year of commit activity
    C++ 139 18 29 3 Updated Nov 11, 2024
  • ont-spectre Public
    nanoporetech/ont-spectre’s past year of commit activity
    Python 2 0 4 0 Updated Nov 9, 2024
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    nanoporetech/hatch-protobuf’s past year of commit activity
    Python 4 0 1 1 Updated Oct 28, 2024
  • medaka Public

    Sequence correction provided by ONT Research

    nanoporetech/medaka’s past year of commit activity
    Python 420 74 13 0 Updated Oct 11, 2024
  • homebrew-tap Public

    Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.

    nanoporetech/homebrew-tap’s past year of commit activity
    Ruby 6 0 0 0 Updated Oct 4, 2024
  • modkit Public

    A bioinformatics tool for working with modified bases

    nanoporetech/modkit’s past year of commit activity
    Rust 144 8 97 0 Updated Sep 27, 2024
  • read_until_api Public

    Read Until client library for Nanopore Sequencing

    nanoporetech/read_until_api’s past year of commit activity
    Python 103 12 0 0 Updated Sep 25, 2024
  • remora Public

    Methylation/modified base calling separated from basecalling.

    nanoporetech/remora’s past year of commit activity
    Python 157 20 5 1 Updated Sep 17, 2024
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