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Ignore multiple mods in adjust-mods #237

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Ge0rges opened this issue Jul 22, 2024 · 1 comment
Open

Ignore multiple mods in adjust-mods #237

Ge0rges opened this issue Jul 22, 2024 · 1 comment
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enhancement New feature or request

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@Ge0rges
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Ge0rges commented Jul 22, 2024

Just a convenience feature would be able to do modkit adjust-mods --ignore a,m.

@ArtRand
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ArtRand commented Jul 23, 2024

Hello @Ge0rges,

That's a good idea (thanks), especially for mods on different primary bases. Right now you'd have to do it through a pipe.

$ modkit adjust-mods ${bam} stdout --ignore m | modkit adjust-mods stdin ${adjusted_bam} --ignore a

@ArtRand ArtRand added the enhancement New feature or request label Jul 23, 2024
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