Each directory contains all data and code used to generate each figure.
CF-random structure alternative predictions were generated with ColabFold1.5.5 as follows:
-> KaiB proteins: --num-seeds 33 --num-models 5 --model-type alphafold2 --max-seq 1 --max-extra-seq 2
-> Mad2: --num-seeds 19 --num-models 5 --model-type alphafold2 --max-seq 8 --max-extra-seq 16
-> RfaH: --num-seeds 25 --num-models 5 --model-type alphafold2 --max-seq 64 --max-extra-seq 128
Programs were run on Linux and Mac OS 14.3.1.
Code for analysis written in python3 using the following libraries:
-> pandas
-> numpy
-> mdtraj
-> matplotlib
-> seaborn
-> biopython