NoClassDefFoundError and NoSuchMethodError

[m007]

I'm currently running the official Neo4j 3.1.0 from dockerhub.com as base for a docker image where I use the latest version of this repository to build the *server-plugin.jar to the plugins directory.

Running the new importOSM procedure

CALL spatial.importOSM('/opt/spatial/minimal-indoor-model.osm');

results in

Failed to invoke procedure `spatial.importOSM`: Caused by: java.lang.NoClassDefFoundError: org/geotools/filter/text/cql2/CQLException

And just plainly

CALL spatial.procedures;

results in

Failed to invoke procedure `spatial.procedures`: Caused by: java.lang.NoSuchMethodError: org.neo4j.kernel.impl.proc.Procedures.getAll()Ljava/util/Set;

Can anybody reproduce this issue?

Note: this may be related to #290.

[jexp]

We just pushed a branch of spatial for 3.1 either you can build it locally or we'll provide a temporary jar to test here https://dl.dropboxusercontent.com/u/14493611/neo4j-spatial-0.24-neo4j-3.1.0-server-plugin.jar

[m007]

I worked on these issues together with @schrieveslaach and we found out the following:

On the NoSuchMethodError

CALL spatial.procedures; resulting in java.lang.NoSuchMethodError: org.neo4j.kernel.impl.proc.Procedures.getAll()Ljava/util/Set; was due to a version mismatch. The method was renamed (see this line in 66a6504). We initially fixed that ourself because we weren't aware of the above mentioned commit/3.1 branch. So this is no issue anymore, nice 👍

On the NoClassDefFoundError

CALL spatial.importOSM('/opt/spatial/minimal-indoor-model.osm'); resulting in java.lang.NoClassDefFoundError: org/geotools/filter/text/cql2/CQLException is still not fixed. I tried building the server-plugin.jar myself in the 3.1 branch and one more time with the jar from your dropbox. However, we were able to fix that issue manually: We did find that, in fact, org/geotools/filter/text/cql2/CQLException.class is not included in the server-plugin.jar, so the manual solution was to just add that .class file. Afterwards we were good to go.

As the three of us know, NoClassDefFoundError just states that a class was available during compiling, but isn't anymore when used during runtime, so manually adding the .class file if it's in fact missing seemed straightforward.

What currently bothers me is, why is the class missing in the jar?

--

Note 1: I assume that org/geotools/filter/text/cql2/CQLException.class isn't the only missing class, since the server-plugin.jar doesn't even contain the folder structure of /text/cql2/ below org/geotools/filter/.
Note 2: @schrieveslaach feel free to add or correct me.

[schrieveslaach]

@m007, that's correct. In fact, we added all .class files of org.geotool:gt-cql jar file to the server plugin jar.

[wadael]

on 20170812, using the latest sources (v3.1.4 I presume with a 3.1.3 server), built JARs (skipping tests, 2 are failing), I get a NoClassDefFoundError: org/geotools/filter/text/cql2/CQLException
on a
call spatial.importOSM('/home/jerome/Tools/neo/neo4j-community-3.1.3/import/map.osm')

call spatial.procedures() works

BTW, I get a FileNotFoundException if I use file:// protocol
Would be even better if all plugins could interact with files coherently or allow both (with/without protocol), also using import folder as root.

[wadael]

I tried to add

org.geotools
gt-cql
${geotools.version}
compile

without luck. I'm going to bed with even more impostor syndrom

v14.4 is not latest but has the CQLException class

[m007]

@wadael are you familiar with docker? If so, you could use this Dockerfile (which solved the issue for me):

FROM neo4j:3.1.1
RUN apk add --update zip unzip && rm -rf /var/cache/apk/*

RUN curl -s -L -o /var/lib/neo4j/plugins/neo4j-spatial-server-plugin.jar https://github.com/neo4j-contrib/m2/blob/master/releases/org/neo4j/neo4j-spatial/0.24-neo4j-3.1.1/neo4j-spatial-0.24-neo4j-3.1.1-server-plugin.jar?raw=true

# Patch the server-plugin.jar file with missing .class files
# The issue and patching were both documented here https://github.com/neo4j-contrib/spatial/issues/293
RUN curl -s -L -o /tmp/gt-cql.jar http://repo.boundlessgeo.com/main/org/geotools/gt-cql/14.4/gt-cql-14.4.jar && \
    unzip -q /tmp/gt-cql.jar -d /tmp && \
    cd /tmp && \
    zip -q -ur /var/lib/neo4j/plugins/neo4j-spatial-server-plugin.jar ./org/ && \
    rm -r /tmp/org /tmp/gt-cql.jar

EXPOSE 7474
CMD ["neo4j"]

This completely fixes the issues for server version 3.1.1 with plugin version 0.24.

[wadael]

@m007 Thank you, the dockerfile put me on tracks.
I rage-copied all the dependencies of the project in $NEO_HOME/lib, with gt-cql amongst the jars.
CALL spatial.importOSM('/home/jerome/Tools/neo/map.osm') worked.
However, why adding the dep in the pom failed leaves me puzzled ... as it appears with mvn dependency:tree |grep cql
and scope is compile

[m007]

@wadael glad to be able to help. As far as why the dependencies are missing question is concerned I have no idea either.

[schrieveslaach]

@m007 and @wadael, can you try the provided version, provided in #318? Remember to change the extension from .zip to .jar

[schrieveslaach]

Here is a Dockerfile

FROM neo4j:3.1.1
RUN apk add --update zip unzip && rm -rf /var/cache/apk/*

RUN curl -s -L -o /var/lib/neo4j/plugins/neo4j-spatial-server-plugin.jar https://github.com/neo4j-contrib/spatial/files/1227950/neo4j-spatial-0.24-neo4j-3.1.4-server-plugin.zip

EXPOSE 7474
CMD ["neo4j"]

[m007]

After executing

CALL spatial.importOSM('/mnt/map.osm');

for a manually added map.osm file I can confirm that your proposed server-plugin.jar version works 👍 (i.e. does not throw the NoClassDefFoundError). I tested that using the above listed Dockerfile with one minor change:

FROM neo4j:3.1.4

matching the server version name in the .zip file.

[craigtaverner]

This issue due to the OSMLayer extending DynamicLayer which depended on CQL for specifying virtual layers. While OSMLayer itself does not need the CQL capability, this dependency caused the problem. I've added gt-cql to the server-plugin jar now, and released 0.24.1 with this change. See https://github.com/neo4j-contrib/spatial/releases/tag/0.24.1-neo4j-3.1.1