Fix for rordenlab/dcm2niix#127

neurolabusc · Aug 31, 2017 · 1e12b22 · 1e12b22
1 parent be2dc36
commit 1e12b22
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Showing 27 changed files with 147 additions and 93 deletions.
diff --git a/Ref/68_PF_no_iPAT_5.json b/Ref/68_PF_no_iPAT_5.json
@@ -7,6 +7,8 @@
 	"InstitutionName": "Palmetto_Health_Richland",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "67060",
+	"StationName": "MRC35131",
+	"ScanOptions": "PFP_FS",
 	"SoftwareVersions": "syngo_MR_D13D",
 	"ProcedureStepDescription": "Research_Rorden_Prisma",
 	"ScanningSequence": "EP",
@@ -78,5 +80,5 @@
 		1.7775	],
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/6_8_PF_no_iPAT_2.json b/Ref/6_8_PF_no_iPAT_2.json
@@ -7,6 +7,8 @@
 	"InstitutionName": "Palmetto_Health_Richland",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "67060",
+	"StationName": "MRC35131",
+	"ScanOptions": "PFP_FS",
 	"SoftwareVersions": "syngo_MR_D13D",
 	"ProcedureStepDescription": "Research_Rorden_Prisma",
 	"ScanningSequence": "EP",
@@ -27,5 +29,5 @@
 	"TotalReadoutTime": 0.0230298,
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/ax_asc_35sl_6.json b/Ref/ax_asc_35sl_6.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -63,5 +65,5 @@
 		2.4375	],
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/ax_asc_36sl_11.json b/Ref/ax_asc_36sl_11.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -64,5 +66,5 @@
 		2.44	],
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/ax_asc_36sl_9.json b/Ref/ax_asc_36sl_9.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -64,5 +66,5 @@
 		2.44	],
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/ax_desc_35sl_7.json b/Ref/ax_desc_35sl_7.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -63,5 +65,5 @@
 		0	],
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/ax_desc_36sl_10.json b/Ref/ax_desc_36sl_10.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -64,5 +66,5 @@
 		0	],
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/ax_int_35sl_8.json b/Ref/ax_int_35sl_8.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -63,5 +65,5 @@
 		1.22	],
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/ax_int_36sl_12.json b/Ref/ax_int_36sl_12.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -64,5 +66,5 @@
 		1.185	],
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/cor_asc_35sl_16.json b/Ref/cor_asc_35sl_16.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -61,7 +63,7 @@
 		2.295,
 		2.3675,
 		2.4375	],
-	"PhaseEncodingDirection": "i-",
+	"PhaseEncodingDirection": "i",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/cor_asc_36sl_13.json b/Ref/cor_asc_36sl_13.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -62,7 +64,7 @@
 		2.3,
 		2.37,
 		2.44	],
-	"PhaseEncodingDirection": "i-",
+	"PhaseEncodingDirection": "i",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/cor_desc_35sl_17.json b/Ref/cor_desc_35sl_17.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -61,7 +63,7 @@
 		0.145,
 		0.0725,
 		0	],
-	"PhaseEncodingDirection": "i-",
+	"PhaseEncodingDirection": "i",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/cor_desc_36sl_14.json b/Ref/cor_desc_36sl_14.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -62,7 +64,7 @@
 		0.14,
 		0.07,
 		0	],
-	"PhaseEncodingDirection": "i-",
+	"PhaseEncodingDirection": "i",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/cor_int_35sl_18.json b/Ref/cor_int_35sl_18.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -61,7 +63,7 @@
 		1.1475,
 		2.4375,
 		1.2175	],
-	"PhaseEncodingDirection": "i-",
+	"PhaseEncodingDirection": "i",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/cor_int_36sl_15.json b/Ref/cor_int_36sl_15.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -62,7 +64,7 @@
 		1.115,
 		2.44,
 		1.185	],
-	"PhaseEncodingDirection": "i-",
+	"PhaseEncodingDirection": "i",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/fMRI_MB_asc_25.json b/Ref/fMRI_MB_asc_25.json
@@ -6,6 +6,8 @@
 	"InstitutionName": "USC",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
+	"StationName": "MRC35131",
+	"ScanOptions": "FS",
 	"SoftwareVersions": "syngo_MR_B17",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"ScanningSequence": "EP",
@@ -29,7 +31,7 @@
 		0.2775,
 		0.4175,
 		0.5575,
-		0.695,
+		0.6975,
 		0.835,
 		0.975,
 		1.115,
@@ -38,29 +40,29 @@
 		1.5325,
 		1.6725,
 		1.8125,
-		1.95,
+		1.9525,
 		2.09,
 		2.23,
 		2.37,
-		2.51,
-		2.6475,
-		2.7875,
-		2.9275,
-		3.0675,
-		3.205,
-		3.345,
-		3.485,
-		3.625,
-		3.765,
-		3.9025,
-		4.0425,
-		4.1825,
-		4.3225,
-		4.46,
-		4.6,
-		4.74,
-		4.88	],
+		0,
+		0.1375,
+		0.2775,
+		0.4175,
+		0.5575,
+		0.6975,
+		0.835,
+		0.975,
+		1.115,
+		1.255,
+		1.3925,
+		1.5325,
+		1.6725,
+		1.8125,
+		1.9525,
+		2.09,
+		2.23,
+		2.37	],
 	"PhaseEncodingDirection": "j-",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170818 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
 }