Fix failing tests

Signed-off-by: Ben Sherman <bentshermann@gmail.com>
nextflow-io · Dec 11, 2024 · 69dfe54 · 69dfe54
1 parent 3de3275
commit 69dfe54
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/modules/nextflow/src/main/groovy/nextflow/config/ConfigBuilder.groovy b/modules/nextflow/src/main/groovy/nextflow/config/ConfigBuilder.groovy
@@ -338,7 +338,7 @@ class ConfigBuilder {
         binding.put('baseDir', base)
         binding.put('projectDir', base)
         binding.put('launchDir', Paths.get('.').toRealPath())
-        binding.put('outputDir', Paths.get('results').toRealPath())
+        binding.put('outputDir', Paths.get('results').complete())
         binding.put('secrets', SecretsLoader.secretContext())
         return binding
     }

diff --git a/modules/nextflow/src/test/groovy/nextflow/config/ConfigBuilderTest.groovy b/modules/nextflow/src/test/groovy/nextflow/config/ConfigBuilderTest.groovy
@@ -148,6 +148,7 @@ class ConfigBuilderTest extends Specification {
             q = "$baseDir/2"
             x = "$projectDir/3"
             y = "$launchDir/4"
+            z = "$outputDir/5"
         }
         '''
 
@@ -158,6 +159,7 @@ class ConfigBuilderTest extends Specification {
         cfg.params.q == '/base/path/2'
         cfg.params.x == '/base/path/3'
         cfg.params.y == "${Paths.get('.').toRealPath()}/4"
+        cfg.params.z == "${Paths.get('results').complete()}/5"
 
     }