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Fix closure rendering in yaml and json config #5408

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merged 4 commits into from
Oct 18, 2024

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pditommaso
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This PR fixed the rendering of closures in config file reporting as strings.

For example

{ 
   "process": {
        "memory": "{ 1.GB }"
    }
} 

or

process:
  memory: '{ 1.GB }'

Signed-off-by: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
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Signed-off-by: Ben Sherman <bentshermann@gmail.com>
Comment on lines +365 to +372
if( value instanceof Map ) {
final map = value as Map
final ret = new LinkedHashMap(map.size())
for( Map.Entry entry : map.entrySet() ) {
ret.put(entry.key, normaliseObject0(entry.value))
}
return ret
}
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is there a case where you would have a closure in a list? I can't think of any

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Likely we don't any in the config, but as general solution makes sense to have it

@pditommaso pditommaso merged commit d3a85ce into master Oct 18, 2024
11 checks passed
@pditommaso pditommaso deleted the fix-clousure-rendering branch October 18, 2024 13:03
alberto-miranda pushed a commit to alberto-miranda/nextflow that referenced this pull request Nov 19, 2024
…fast]



Signed-off-by: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
Signed-off-by: Ben Sherman <bentshermann@gmail.com>
Co-authored-by: Ben Sherman <bentshermann@gmail.com>
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2 participants