wip! anthropoids shirr #281
Workflow file for this run
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| name: CI | ||
| on: | ||
| - push | ||
| - pull_request | ||
| - workflow_dispatch | ||
| jobs: | ||
| test-setup-nextstrain-cli: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: ./actions/setup-nextstrain-cli | ||
| - run: nextstrain version --verbose | ||
| test-pathogen-repo-ci: | ||
| uses: ./.github/workflows/pathogen-repo-ci.yaml | ||
| with: | ||
| repo: nextstrain/zika | ||
| secrets: inherit | ||
| test-pathogen-repo-ci-no-example-data: | ||
| uses: ./.github/workflows/pathogen-repo-ci.yaml | ||
| with: | ||
| repo: nextstrain/zika-tutorial | ||
| test-pathogen-repo-ci-failure: | ||
| uses: ./.github/workflows/pathogen-repo-ci.yaml | ||
| with: | ||
| repo: nextstrain/zika-tutorial | ||
| build-args: __BOGUS_BUILD_TARGET__ | ||
| continue-on-error: true | ||
| test-docs-ci-conda: | ||
| uses: ./.github/workflows/docs-ci.yaml | ||
| with: | ||
| repo: nextstrain/docs.nextstrain.org | ||
| docs-directory: . | ||
| environment-file: environment.yml | ||
| test-docs-ci-pip: | ||
| uses: ./.github/workflows/docs-ci.yaml | ||
| with: | ||
| repo: nextstrain/augur | ||
| docs-directory: docs/ | ||
| pip-install-target: .[dev] | ||
| test-pathogen-repo-build: | ||
| permissions: | ||
| id-token: write | ||
| strategy: | ||
| matrix: | ||
| runtime: [docker, conda] | ||
| uses: ./.github/workflows/pathogen-repo-build.yaml | ||
|
Check failure on line 54 in .github/workflows/ci.yaml
|
||
| with: | ||
| repo: nextstrain/zika-tutorial | ||
| runtime: ${{ matrix.runtime }} | ||
| run: nextstrain build --env BOGUS_ENVVAR . | ||
| artifact-name: build-output-${{ matrix.runtime }} | ||
| env: | | ||
| BOGUS_ENVVAR: BOGUS_ENVVAR | ||
| secrets: inherit | ||
| lint: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - run: ./devel/check-readme | ||
| - uses: ./actions/shellcheck | ||
