Use shared setup script for all Cram tests #2868

Job	Run time
mypy	50s
check-docs	35s
pathogen-repo-ci (dengue)	2m 49s
pathogen-repo-ci-v0 (avian-flu)	50s
pathogen-repo-ci (lassa)	39s
pathogen-repo-ci-v0 (ebola)	56s
pathogen-repo-ci (measles)	1m 34s
pyright	21s
pathogen-repo-ci-v0 (mumps)	57s
pathogen-repo-ci (mpox)	1m 13s
test (python=3.8 biopython=1.80)	11m 33s
pathogen-repo-ci-v0 (ncov)	1m 7s
test (python=3.8 biopython=latest)	11m 11s
pathogen-repo-ci (seasonal-cov)	1m 54s
pathogen-repo-ci-v0 (rsv)	8m 44s
test (python=3.9 biopython=1.80)	12m 22s
pathogen-repo-ci (zika)	1m 0s
pathogen-repo-ci-v0 (seasonal-flu)	1m 14s
test (python=3.9 biopython=latest)	13m 5s
pathogen-repo-ci-v0 (tb)	1m 15s
test (python=3.10 biopython=1.80)	12m 17s
test (python=3.10 biopython=latest)	12m 6s
test (python=3.11 biopython=1.80)	12m 15s
test (python=3.11 biopython=latest)	12m 31s
build-docs / build-conda	0s
build-docs / build-pip	2m 9s
codecov	13s
	2h 5m 40s

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