fix: explicitly specify how the root and ambiguous states are handled… #3124
huddlejci.yaml
on: pull_request
Matrix: pytest-cram
mypy
54s
pyright
21s
build-docs
/
build
2m 17s
check-docs
35s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
12s
rebuild-docker-image
0s
Annotations
37 warnings
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pyright
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-docs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (ebola)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (avian-flu)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (mumps)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (wnv)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (zika)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (ncov)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (seasonal-flu)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (mpox)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (measles)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (tb)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (oropouche)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (seasonal-cov)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (rabies)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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build-docs / build
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (dengue)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (yellow-fever)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (lassa)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (rsv)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.11 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.10 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.9 biopython=1.80)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.11 biopython=1.80)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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test (python=3.10 biopython=1.80)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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test (python=3.11 biopython=latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.9 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.10 biopython=latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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test (python=3.9 biopython=latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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test (python=3.12 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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test (python=3.12 biopython=latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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codecov
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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coverage
|
167 KB |
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output-avian-flu
|
96.6 KB |
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output-dengue
|
1.33 MB |
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output-ebola
|
112 KB |
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output-lassa
|
1.42 MB |
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output-measles
|
3.86 MB |
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output-mpox
|
12.8 MB |
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output-mumps
|
339 KB |
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output-ncov
|
708 KB |
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output-oropouche
|
503 KB |
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output-rabies
|
4.89 MB |
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output-rsv
|
9.48 MB |
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output-seasonal-cov
|
1.62 MB |
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output-seasonal-flu
|
53.9 KB |
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output-tb
|
5.03 MB |
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output-wnv
|
180 KB |
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output-yellow-fever
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2.14 MB |
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output-zika
|
745 KB |
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