Skip to content

Commit

Permalink
Merge pull request #1375: Enable pathogen-repo-ci for rsv
Browse files Browse the repository at this point in the history
  • Loading branch information
victorlin authored Dec 22, 2023
2 parents 00c0e9e + 31f01d8 commit ad4ed1b
Showing 1 changed file with 6 additions and 3 deletions.
9 changes: 6 additions & 3 deletions .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -95,9 +95,7 @@ jobs:
pathogen: ncov,
build-args: all_regions -j 2 --profile nextstrain_profiles/nextstrain-ci,
}
# Disable rsv CI until Nextclade v3 is available on Conda.
# See issue https://github.com/nextstrain/private/issues/97
# - { pathogen: rsv }
- { pathogen: rsv }
- {
pathogen: seasonal-flu,
build-args: --configfile profiles/ci/builds.yaml -p,
Expand All @@ -113,6 +111,10 @@ jobs:
with:
path: ./augur

- name: Set cache key
id: cache-key
run: echo "DATE=$(date +'%Y-%m-%d')" >> "$GITHUB_ENV"

- uses: mamba-org/setup-micromamba@v1
with:
create-args: nextstrain-base
Expand All @@ -123,6 +125,7 @@ jobs:
- bioconda
channel_priority: strict
cache-environment: true
cache-environment-key: ${{ env.DATE }}
environment-name: augur

- run: pip install ./augur
Expand Down

0 comments on commit ad4ed1b

Please sign in to comment.