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Reference new top-level name in quickstart build
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victorlin committed Apr 19, 2024
1 parent f8df5ff commit cb887f6
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions quickstart-build/Snakefile
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ SEGMENTS = ["ha"]
generated JSON files in the auspice folder for each subtype and segment."""
rule all:
input:
auspice_json = expand("auspice/flu_avian_{subtype}_{segment}.json", subtype=SUBTYPES, segment=SEGMENTS)
auspice_json = expand("auspice/avian-flu_{subtype}_{segment}.json", subtype=SUBTYPES, segment=SEGMENTS)

"""Specify all input files here. For this build, you'll start with input sequences
from the example_data folder, which contain metadata information in the
Expand Down Expand Up @@ -305,7 +305,7 @@ rule export:
node_data = node_data_by_wildcards,
auspice_config = files.auspice_config
output:
auspice_json = "auspice/flu_avian_{subtype}_{segment}.json"
auspice_json = "auspice/avian-flu_{subtype}_{segment}.json"
shell:
"""
augur export v2 \
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