Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
vdb/flu_upload: only prefix accession with "EPI" if needed
Digging through git history and found example of FASTA header that suggests GISAID did not used to include the "EPI" prefix in their DNA Accession no. field.¹ This must have changed around October 2023 because we have sequences with "EPIEPI" accessions for sequences submitted after September 27th 2023.² This commit changes the ingest to only prefix with "EPI" if the accession does not already have the prefix. ¹ https://github.com/nextstrain/fauna/blame/f485baa3621002b3ff6f833c743180239a92bf14/vdb/gisaid_flu_upload.py#L281-L282 ² https://bedfordlab.slack.com/archives/C03KWDET9/p1700609695217959
- Loading branch information