Add automatic detection of datasets #987
Workflow file for this run
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| # Build web app and deploy it | |
| name: web | |
| on: | |
| push: | |
| branches: ['master', 'staging', 'release'] | |
| pull_request: | |
| repository_dispatch: | |
| types: build | |
| workflow_dispatch: | |
| workflow_call: | |
| concurrency: | |
| group: web-${{ github.workflow }}-${{ github.ref_type }}-${{ github.event.pull_request.number || github.ref || github.run_id }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -euxo pipefail {0} | |
| env: | |
| GITHUB_REPOSITORY_URL: ${{ github.server_url }}/${{ github.repository }} | |
| VERBOSE: 1 | |
| jobs: | |
| build-web: | |
| name: "Build Web" | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: "Setup environment (release)" | |
| if: endsWith(github.ref, '/release') | |
| run: | | |
| echo "ENV_NAME=release" >> $GITHUB_ENV | |
| echo "FULL_DOMAIN=https://clades.nextstrain.org" >> $GITHUB_ENV | |
| echo "DATA_FULL_DOMAIN=https://data.clades.nextstrain.org/v3" >> $GITHUB_ENV | |
| echo "PLAUSIBLE_IO_DOMAIN=clades.nextstrain.org" >> $GITHUB_ENV | |
| - name: "Setup environment (staging)" | |
| if: endsWith(github.ref, '/staging') | |
| run: | | |
| echo "ENV_NAME=staging" >> $GITHUB_ENV | |
| echo "FULL_DOMAIN=https://staging.clades.nextstrain.org" >> $GITHUB_ENV | |
| echo "DATA_FULL_DOMAIN=https://data.staging.clades.nextstrain.org/v3" >> $GITHUB_ENV | |
| echo "PLAUSIBLE_IO_DOMAIN=staging.clades.nextstrain.org" >> $GITHUB_ENV | |
| - name: "Setup environment (master)" | |
| if: ${{ !endsWith(github.ref, '/staging') && !endsWith(github.ref, '/release') }} | |
| run: | | |
| echo "ENV_NAME=master" >> $GITHUB_ENV | |
| echo "FULL_DOMAIN=https://master.clades.nextstrain.org" >> $GITHUB_ENV | |
| echo "DATA_FULL_DOMAIN=https://data.master.clades.nextstrain.org/v3" >> $GITHUB_ENV | |
| echo "PLAUSIBLE_IO_DOMAIN=master.clades.nextstrain.org" >> $GITHUB_ENV | |
| - name: "Checkout code" | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: "Get docker build checksum" | |
| id: docker-build-checksum | |
| run: echo "checksum=$(./scripts/docker_build_checksum.sh)" >> $GITHUB_OUTPUT | |
| - name: "Setup cache for Docker buildx" | |
| uses: actions/cache@v3 | |
| with: | |
| path: .cache/docker/buildx | |
| key: cache-v1-buildx-${{ runner.os }}-wasm32-unknown-unknown-${{ steps.docker-build-checksum.outputs.checksum }} | |
| restore-keys: | | |
| cache-v1-buildx-${{ runner.os }}-wasm32-unknown-unknown-${{ steps.docker-build-checksum.outputs.checksum }} | |
| cache-v1-buildx-${{ runner.os }}-wasm32-unknown-unknown- | |
| cache-v1-buildx-${{ runner.os }}-${{ steps.docker-build-checksum.outputs.checksum }} | |
| cache-v1-buildx-${{ runner.os }}- | |
| - name: "Setup cache for Rust and Cargo" | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| .build/ | |
| .cache/docker/.cargo | |
| packages_rs/nextclade-web/.build/docker | |
| key: cache-v1-cargo-${{ runner.os }}-wasm32-unknown-unknown-${{ hashFiles('**/Cargo.lock') }} | |
| restore-keys: | | |
| cache-v1-cargo-${{ runner.os }}-wasm32-unknown-unknown-${{ hashFiles('**/Cargo.lock') }} | |
| cache-v1-cargo-${{ runner.os }}-wasm32-unknown-unknown- | |
| cache-v1-cargo-${{ runner.os }}- | |
| - name: "Setup cache for web app" | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| packages_rs/nextclade-web/.build/production/tmp/cache | |
| packages_rs/nextclade-web/.cache | |
| packages_rs/nextclade-web/node_modules | |
| key: cache-v1-web-${{ runner.os }}-wasm32-unknown-unknown-${{ hashFiles('**/yarn.lock') }} | |
| restore-keys: | | |
| cache-v1-web-${{ runner.os }}-wasm32-unknown-unknown-${{ hashFiles('**/yarn.lock') }} | |
| cache-v1-web-${{ runner.os }}-wasm32-unknown-unknown- | |
| cache-v1-web-${{ runner.os }}- | |
| - name: "Prepare .env file" | |
| run: | | |
| cp .env.example .env | |
| sed -i -e "s|FULL_DOMAIN=autodetect|FULL_DOMAIN=${FULL_DOMAIN}|g" .env | |
| sed -i -e "s|DATA_FULL_DOMAIN=https://data.master.clades.nextstrain.org/v3|DATA_FULL_DOMAIN=${DATA_FULL_DOMAIN}|g" .env | |
| - name: "Login to Docker Hub" | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: docker.io | |
| username: nextstrainbot | |
| password: ${{ secrets.DOCKER_TOKEN }} | |
| - name: "Build docker image" | |
| run: | | |
| CROSS="wasm32-unknown-unknown" ./docker-dev docker-image-build-push | |
| - name: "Install Node.js packages" | |
| run: | | |
| ./docker-dev web yarn install | |
| - name: "Build WebAssembly module" | |
| run: | | |
| ./docker-dev wasm-release | |
| - name: "Build web app" | |
| run: | | |
| ./docker-dev web-release | |
| - name: "Lint web app code" | |
| run: | | |
| ./docker-dev web yarn lint:ci | |
| - name: "Lint Rust code" | |
| run: | | |
| ./docker-dev lint-ci | |
| - name: "Upload build artifacts" | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: out | |
| path: "packages_rs/nextclade-web/.build/production/web" | |
| deploy-web: | |
| name: "Deploy Web" | |
| if: ${{ endsWith(github.ref, '/master') || endsWith(github.ref, '/staging') || endsWith(github.ref, '/release') }} | |
| needs: [ build-web ] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: "Setup environment (release)" | |
| if: endsWith(github.ref, '/release') | |
| run: | | |
| echo "AWS_ACCESS_KEY_ID=${{ secrets.RELEASE_AWS_ACCESS_KEY_ID }}" >> $GITHUB_ENV | |
| echo "AWS_SECRET_ACCESS_KEY=${{ secrets.RELEASE_AWS_SECRET_ACCESS_KEY }}" >> $GITHUB_ENV | |
| echo "AWS_CLOUDFRONT_DISTRIBUTION_ID=${{ secrets.RELEASE_AWS_CLOUDFRONT_DISTRIBUTION_ID }}" >> $GITHUB_ENV | |
| echo "AWS_DEFAULT_REGION=${{ secrets.RELEASE_AWS_DEFAULT_REGION }}" >> $GITHUB_ENV | |
| echo "AWS_S3_BUCKET=${{ secrets.RELEASE_AWS_S3_BUCKET }}" >> $GITHUB_ENV | |
| - name: "Setup environment (staging)" | |
| if: endsWith(github.ref, '/staging') | |
| run: | | |
| echo "AWS_ACCESS_KEY_ID=${{ secrets.STAGING_AWS_ACCESS_KEY_ID }}" >> $GITHUB_ENV | |
| echo "AWS_SECRET_ACCESS_KEY=${{ secrets.STAGING_AWS_SECRET_ACCESS_KEY }}" >> $GITHUB_ENV | |
| echo "AWS_CLOUDFRONT_DISTRIBUTION_ID=${{ secrets.STAGING_AWS_CLOUDFRONT_DISTRIBUTION_ID }}" >> $GITHUB_ENV | |
| echo "AWS_DEFAULT_REGION=${{ secrets.STAGING_AWS_DEFAULT_REGION }}" >> $GITHUB_ENV | |
| echo "AWS_S3_BUCKET=${{ secrets.STAGING_AWS_S3_BUCKET }}" >> $GITHUB_ENV | |
| - name: "Setup environment (master)" | |
| if: ${{ !endsWith(github.ref, '/staging') && !endsWith(github.ref, '/release') }} | |
| run: | | |
| echo "AWS_ACCESS_KEY_ID=${{ secrets.MASTER_AWS_ACCESS_KEY_ID }}" >> $GITHUB_ENV | |
| echo "AWS_SECRET_ACCESS_KEY=${{ secrets.MASTER_AWS_SECRET_ACCESS_KEY }}" >> $GITHUB_ENV | |
| echo "AWS_CLOUDFRONT_DISTRIBUTION_ID=${{ secrets.MASTER_AWS_CLOUDFRONT_DISTRIBUTION_ID }}" >> $GITHUB_ENV | |
| echo "AWS_DEFAULT_REGION=${{ secrets.MASTER_AWS_DEFAULT_REGION }}" >> $GITHUB_ENV | |
| echo "AWS_S3_BUCKET=${{ secrets.MASTER_AWS_S3_BUCKET }}" >> $GITHUB_ENV | |
| - name: "Checkout code" | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: "Download build artifacts" | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: "out" | |
| path: "packages_rs/nextclade-web/.build/production/web" | |
| - name: "Install deploy dependencies" | |
| run: | | |
| mkdir -p "${HOME}/bin" | |
| curl -fsSL "https://github.com/cli/cli/releases/download/v2.10.1/gh_2.10.1_linux_amd64.tar.gz" | tar xz -C "${HOME}/bin" --strip-components=2 gh_2.10.1_linux_amd64/bin/gh | |
| sudo apt-get install brotli pigz parallel rename --yes -qq >/dev/null | |
| pushd /tmp >/dev/null | |
| curl -fsSL "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" | |
| unzip -oqq awscliv2.zip | |
| sudo ./aws/install --update | |
| popd >/dev/null | |
| aws --version | |
| - name: "Deploy web app" | |
| run: | | |
| ./scripts/deploy_web.sh | |
| - name: "Create and push git tag" | |
| if: ${{ endsWith(github.ref, '/release') }} | |
| run: | | |
| git config user.email "${{ secrets.GIT_USER_EMAIL }}" | |
| git config user.name "${{ secrets.GIT_USER_NAME }}" | |
| pushd packages_rs/nextclade-web >/dev/null | |
| export version=$(node -e "\ | |
| const pkg = require('./package.json'); \ | |
| console.log(pkg.version) \ | |
| ") | |
| popd >/dev/null | |
| git tag "web-${version}" | |
| git push origin "web-${version}" |