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chore: rebuild [skip ci]
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nextstrain-bot committed Jun 13, 2024
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- Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
- All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
- Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>
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- Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
- All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
- Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>
Expand Down
Binary file modified data_output/nextstrain/sars-cov-2/BA.2/unreleased/dataset.zip
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Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@

- Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
- All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
- Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>
Expand Down
Binary file modified data_output/nextstrain/sars-cov-2/XBB/unreleased/dataset.zip
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2 changes: 1 addition & 1 deletion data_output/nextstrain/sars-cov-2/XBB/unreleased/tree.json

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Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@

- Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
- All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
- Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>
Expand Down
Binary file not shown.

Large diffs are not rendered by default.

Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@

- Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
- All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
- Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>
Expand Down
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